2872 implementation of mixup, cutmix and cutout#7198

Merged

KumoLiu merged 90 commits intoProject-MONAI:devfrom

juampatronics:2872-mixup

Mar 26, 2024

Commits on Mar 25, 2024

mixup, cutmix and cutout
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added rst file
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[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot]
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juampatronics
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added missing module
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refactor code as submodule of transforms module
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[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot]
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use the randomizable API
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used types compatible with python <3.10
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used types compatible with python <3.10
juampatronics
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fixed isort errors
juampatronics
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[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot]
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auto updates (#7203)

monai-bot
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changes from command ./runtests.sh --autofix
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fix useless error msg in nnunetv2runner (#7217)

elitap
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Fixup mypy 1.7.0 errors (#7231)

f-schnabel
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add Yun Liu to user list to trigger blossom-ci [skip ci] (#7239)

YanxuanLiu
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Replace single quotation marks with double quotation marks to install… (#7234)

ytl0623
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Update bug_report.md (#7213)

authored and
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Add cache option in `GridPatchDataset` (#7180)

authored and
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:memo: [array] Add examples for EnsureType and CastToType (#7245)

ishandutta0098
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:hammer: [dataset] Handle corrupted cached file in PersistentDataset (#7244)

authored and
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auto updates (#7247)

monai-bot
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add class label option to write metric report to improve readability … (#7249)

authored and
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Fix B026 unrecommanded star-arg unpacking after a keyword argument (#7262)

KumoLiu
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Quote $PY_EXE variable to deal with Python path that contain spaces in Bash (#7268)

ytl0623
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add SoftclDiceLoss and SoftDiceclDiceLoss loss function in documentation (#7271)

authored and
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Skip Old Pytorch Versions for `SwinUNETR` (#7266)

KumoLiu
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Bump conda-incubator/setup-miniconda from 2 to 3 (#7274)

dependabot[bot]
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wholeBody_ct_segmentation failed to be download (#7280)

KumoLiu
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update the Python version requirements for transformers (#7275)

KumoLiu
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7263 add diffusion loss (#7272)

authored and
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Fix swinunetrv2 2D bug (#7302)

heyufan1995
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Fix `RuntimeError` in `DataAnalyzer` (#7310)

KumoLiu
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Support specified filenames in `Saveimage` (#7318)

KumoLiu
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juampatronics
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Fix typo (#7321)

KumoLiu
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fix optimizer pararmeter issue (#7322)

binliunls
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Fix `lazy` ignored in `SpatialPadd` (#7316)

authored and
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Update openslide-python version (#7344)

KumoLiu
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Upgrade the version of `transformers` (#7343)

KumoLiu
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Bump github/codeql-action from 2 to 3 (#7354)

dependabot[bot]
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Bump actions/upload-artifact from 3 to 4 (#7350)

dependabot[bot]
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Bump actions/setup-python from 4 to 5 (#7351)

dependabot[bot]
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Bump actions/download-artifact from 3 to 4 (#7352)

dependabot[bot]
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Bump peter-evans/slash-command-dispatch from 3.0.1 to 3.0.2 (#7353)

dependabot[bot]
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Give more useful exception when batch is considered during matrix multiplication (#7326)

authored and
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Fix incorrectly size compute in auto3dseg analyzer (#7374)

KumoLiu
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7380 mention demo in bending energy and diffusion docstrings (#7381)

kvttt
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Pin gdown version to v4.6.3 (#7384)

KumoLiu
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Fix Premerge (#7397)

KumoLiu
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Track applied operations in image filter (#7395)

vlaminckaxel
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Add `compile` support in `SupervisedTrainer` and `SupervisedEvaluator` (#7375)

authored and
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Fix CUDA_VISIBLE_DEVICES setting ignored (#7408)

authored and
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Fix Incorrect updated affine in `NrrdReader` and update docstring in `ITKReader` (#7415)

KumoLiu
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Ignore E704 after update black (#7422)

KumoLiu
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update `rm -rf /opt/hostedtoolcache` avoid change the python version (#7424)

KumoLiu
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juampatronics
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Bump peter-evans/slash-command-dispatch from 3.0.2 to 4.0.0 (#7428)

dependabot[bot]
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Bump peter-evans/create-or-update-comment from 3 to 4 (#7429)

dependabot[bot]
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Bump actions/cache from 3 to 4 (#7430)

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Bump codecov/codecov-action from 3 to 4 (#7431)

dependabot[bot]
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Update tensorboard version to fix deadlock (#7435)

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auto updates (#7439)

monai-bot
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Instantiation mode `"partial"` to `"callable"`. Return the `_target_` component as-is when in `_mode_="callable"` and no kwargs are specified (#7413)

ibro45
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Add support for mlflow experiment name in auto3dseg (#7442)

bhashemian
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Update gdown version (#7448)

KumoLiu
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Skip "test_gaussian_filter" as a workaround for blossom killed (#7474)

KumoLiu
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auto updates (#7463)

monai-bot
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Skip "test_resize" as a workaround for blossom killed (#7484)

KumoLiu
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Fix Python 3.12 import AttributeError (#7482)

KumoLiu
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Update test_nnunetv2runner (#7483)

KumoLiu
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Fix github resource issue when build latest docker (#7450)

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Use int16 instead of int8 in `LabelStats` (#7489)

KumoLiu
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auto updates (#7495)

monai-bot
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Add sample_std parameter to RandGaussianNoise. (#7492)

bakert1
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Add __repr__ and __str__ to Metrics baseclass (#7487)

authored and
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Bump al-cheb/configure-pagefile-action from 1.3 to 1.4 (#7510)

dependabot[bot]
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Add arm support (#7500)

authored and
juampatronics
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Fix error in "test_bundle_trt_export" (#7524)

KumoLiu
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juampatronics
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Fix typo in the PerceptualNetworkType Enum (#7548)

SomeUserName1
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Update to use `log_sigmoid` in `FocalLoss` (#7534)

KumoLiu
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Update integration_segmentation_3d result for PyTorch2403 (#7551)

authored and
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Add Barlow Twins loss for representation learning (#7530)

authored and
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Stein's Unbiased Risk Estimator (SURE) loss and Conjugate Gradient (#7308)

authored and
juampatronics
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fixed code format checks
juampatronics
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added feedback suggestions
juampatronics
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auto updates (#7577)

monai-bot
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flake8 warnings
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DCO Remediation Commit for Juan Pablo de la Cruz Gutiérrez <juampatronics@gmail.com>
juampatronics
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finally got sphinx format right
juampatronics
committed
Merge branch 'dev' into 2872-mixup
juampatronics
authored

Commits on Mar 26, 2024

Merge branch 'dev' into 2872-mixup
KumoLiu
authored