Add support for .seg.nrrd in UpdateSegmentationMask() of the Slicer extension #768
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Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
jlvahldiek
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SachidanandAlle
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May 9, 2022
SachidanandAlle
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Bugs + Miscellaneous [p0],
Clinicians feedback [p0]
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Signed-off-by: Janis Vahldiek <janis@vahldiek.info> Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com> Signed-off-by: Duc <ducdominhstart@googlemail.com>
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Signed-off-by: Janis Vahldiek <janis@vahldiek.info> Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
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At the moment the Slicer extension is not capable of handling .seg.nrrd segmentation files that come in from i.e. an InferTask.
This PR adds support for .seg.nrrd segmentation files. These are directly loaded into Slicer and deep copied to the corresponding segmentation node. Furthermore, the reference image geometry is set from the corresponding volume node.
The implementation to handle all other segmentation file formats is left unchanged.
Not quite sure if this will also work with other MONAILabel functionality but we heavily tested the proposed changes with the auto segmentation functionality.
May closes #766.