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Merged
SachidanandAlle merged 8 commits into from
May 8, 2022
Merged

Nuclick train #772

SachidanandAlle merged 8 commits into from
May 8, 2022

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@SachidanandAlle SachidanandAlle commented May 8, 2022 •
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  • Support NuClick training
  • Use MONAI BUNET

Following is the comparison for BasicUNET (bunet) vs NuClick UNET (nunet) trained over PanNuke dataset (40k+ nuclei for 10 epochs)

image

This is the log for original training using everything from: https://github.com/mostafajahanifar/nuclick_torch over the same dataset

INFO: Using device cuda
INFO: Network:
	5 input channels
	1 output channels (classes)

INFO: Creating dataset with 44741 examples
INFO: Starting training:
        Network:         UNet
        Epochs:          10
        Batch size:      64
        Learning rate:   0.001
        Training size:   35793
        Validation size: 8948
        Loss function:   Weighted_BCE_Dice
        Checkpoints:     True
        Device:          cuda
        Images scaling:  1
        Mixed Precision: False
    
Epoch 1/10: 100%|################################################################################################| 35793/35793 [02:47<00:00, 213.25img/s, loss (batch)=0.346]
INFO: Validation Dice score: 0.6948385834693909                                                                                                                                                                                                                  
INFO: Checkpoint 1 saved!
Epoch 2/10: 100%|################################################################################################| 35793/35793 [06:08<00:00, 97.15img/s, loss (batch)=0.317]
INFO: Validation Dice score: 0.7801803350448608                                                                                                                                                                                                                  
INFO: Checkpoint 2 saved!
Epoch 3/10: 100%|################################################################################################| 35793/35793 [06:11<00:00, 96.34img/s, loss (batch)=0.284]
INFO: Validation Dice score: 0.813300371170044                                                                                                                                                                                                                   
INFO: Checkpoint 3 saved!
Epoch 4/10: 100%|################################################################################################| 35793/35793 [06:08<00:00, 97.07img/s, loss (batch)=0.262]
INFO: Validation Dice score: 0.8261093497276306                                                                                                                                                                                                                  
INFO: Checkpoint 4 saved!
Epoch 5/10: 100%|################################################################################################| 35793/35793 [06:03<00:00, 98.45img/s, loss (batch)=0.142]
INFO: Validation Dice score: 0.8319364190101624                                                                                                                                                                                                                  
INFO: Checkpoint 5 saved!
Epoch 6/10: 100%|################################################################################################| 35793/35793 [06:00<00:00, 99.33img/s, loss (batch)=0.266]
INFO: Validation Dice score: 0.8355947136878967                                                                                                                                                                                                                  
INFO: Checkpoint 6 saved!
Epoch 7/10: 100%|################################################################################################| 35793/35793 [05:59<00:00, 99.51img/s, loss (batch)=0.175]
INFO: Validation Dice score: 0.8366557955741882                                                                                                                                                                                                                  
INFO: Checkpoint 7 saved!
Epoch 8/10: 100%|################################################################################################| 35793/35793 [05:54<00:00, 101.03img/s, loss (batch)=0.331]
INFO: Validation Dice score: 0.842056930065155                                                                                                                                                                                                                   
INFO: Checkpoint 8 saved!
Epoch 9/10: 100%|################################################################################################| 35793/35793 [05:48<00:00, 102.58img/s, loss (batch)=0.142]
INFO: Validation Dice score: 0.8373238444328308                                                                                                                                                                                                                  
INFO: Checkpoint 9 saved!
Epoch 10/10: 100%|################################################################################################| 35793/35793 [05:55<00:00, 100.70img/s, loss (batch)=0.184]
INFO: Validation Dice score: 0.8469359278678894                                                                                                                                                                                                                  
INFO: Checkpoint 10 saved!

@SachidanandAlle
Draft Training workflow for NuClick
a7e02f6 
Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
@SachidanandAlle
Sync up changes for nuclick training
692a1ef 
Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
@SachidanandAlle
Fix nuclick training
1373b78 
Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
@SachidanandAlle
rename transform
7162cbe 
Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
@SachidanandAlle
Sync up changes for nuclick training
6b1bf8b 
Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
@SachidanandAlle
use monai bunet for nuclick
72cfa15 
Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
@SachidanandAlle
fix log
de8b20c 
Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
@SachidanandAlle SachidanandAlle added the 0.4.0 Targeted to Release version 0.4 label May 8, 2022
diazandr3s
diazandr3s approved these changes May 8, 2022
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This is great

@SachidanandAlle SachidanandAlle merged commit a1ca8ff into main May 8, 2022
@SachidanandAlle SachidanandAlle deleted the nuclick_train branch May 8, 2022 21:03
@SachidanandAlle SachidanandAlle mentioned this pull request May 9, 2022
Open
markus-hinsche pushed a commit to rAIdiance/MONAILabel that referenced this pull request May 12, 2022
@SachidanandAlle @markus-hinsche
Nuclick train (Project-MONAI#772)
25f95ab 
* Draft Training workflow for NuClick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Fix nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* rename transform

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* use monai bunet for nuclick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* fix log

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>
SachidanandAlle added a commit that referenced this pull request May 19, 2022
@markus-hinsche @SachidanandAlle
@jlvahldiek @diazandr3s
Add NrrdWriter for multi-channel arrays (#793)
58dc813 
* Only Hide Training area when zero tasks configured (#769)

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Nuclick train (#772)

* Draft Training workflow for NuClick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Fix nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* rename transform

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* use monai bunet for nuclick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* fix log

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add NRRD writer

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>
Co-authored-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add unit test for NRRD writer

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Polish

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add labels to data object, Check for label list

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>
Co-authored-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* update docstrings

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* change writer selection

write_seg_nrrd() is only needed for 4D multi-channel label arrays. Everything else can be handled by ITK of nifty writer.

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* polish

write_seg_nrrd() will only be used for 4D multi-channel label arrays. Thus, removed unnecessary code.

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix typo

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add pynrrd==0.4.2 to setup.cfg

Signed-off-by: Markus Hinsche
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* fix check for multi-channel label

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* fix unit test

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix multichannel problem

Signed-off-by: Markus Hinsche
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Reformat code

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Make mypy happy

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix merge conflict

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Use logger.warning instead logger.debug

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add Active Learning strategies to DeepEdit (#782)

* Add Active Learning strategies to DeepEdit

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

* Update readme - commands Active Learning strategies

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Prepare MONAI Label for new monai - DeepEdit transforms (#781)

* Prepare MONAI Label for new monai - DeepEdit transforms

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

* Add deprecated messages - DeepEdit transforms - interaction

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Mention python versions which are supported (#786)

Signed-off-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add original labels option Slicer UI (#785)

* Add original labels option Slicer UI

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

* Update Slicer module

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix: Check first dimension for multichannel

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Polish unit test to be more specific about dimensions

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Co-authored-by: Janis Vahldiek <janis@vahldiek.info>
Co-authored-by: Andres Diaz-Pinto <diazandr3s@gmail.com>
DaoMaoDuc pushed a commit to jlvahldiek/MONAILabel that referenced this pull request Jun 1, 2022
@SachidanandAlle @DaoMaoDuc
Nuclick train (Project-MONAI#772)
4f779f8 
* Draft Training workflow for NuClick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Fix nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* rename transform

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* use monai bunet for nuclick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* fix log

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
Signed-off-by: Duc <ducdominhstart@googlemail.com>
DaoMaoDuc pushed a commit to jlvahldiek/MONAILabel that referenced this pull request Jun 1, 2022
@markus-hinsche @SachidanandAlle
@jlvahldiek @diazandr3s @DaoMaoDuc
Add NrrdWriter for multi-channel arrays (Project-MONAI#793)
7c0d1c1 
* Only Hide Training area when zero tasks configured (Project-MONAI#769)

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Nuclick train (Project-MONAI#772)

* Draft Training workflow for NuClick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Fix nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* rename transform

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* use monai bunet for nuclick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* fix log

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add NRRD writer

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>
Co-authored-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add unit test for NRRD writer

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Polish

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add labels to data object, Check for label list

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>
Co-authored-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* update docstrings

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* change writer selection

write_seg_nrrd() is only needed for 4D multi-channel label arrays. Everything else can be handled by ITK of nifty writer.

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* polish

write_seg_nrrd() will only be used for 4D multi-channel label arrays. Thus, removed unnecessary code.

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix typo

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add pynrrd==0.4.2 to setup.cfg

Signed-off-by: Markus Hinsche
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* fix check for multi-channel label

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* fix unit test

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix multichannel problem

Signed-off-by: Markus Hinsche
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Reformat code

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Make mypy happy

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix merge conflict

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Use logger.warning instead logger.debug

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add Active Learning strategies to DeepEdit (Project-MONAI#782)

* Add Active Learning strategies to DeepEdit

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

* Update readme - commands Active Learning strategies

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Prepare MONAI Label for new monai - DeepEdit transforms (Project-MONAI#781)

* Prepare MONAI Label for new monai - DeepEdit transforms

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

* Add deprecated messages - DeepEdit transforms - interaction

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Mention python versions which are supported (Project-MONAI#786)

Signed-off-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add original labels option Slicer UI (Project-MONAI#785)

* Add original labels option Slicer UI

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

* Update Slicer module

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix: Check first dimension for multichannel

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Polish unit test to be more specific about dimensions

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Co-authored-by: Janis Vahldiek <janis@vahldiek.info>
Co-authored-by: Andres Diaz-Pinto <diazandr3s@gmail.com>
Signed-off-by: Duc <ducdominhstart@googlemail.com>
Douwe-Spaanderman pushed a commit to Douwe-Spaanderman/MONAILabel that referenced this pull request Dec 9, 2022
@SachidanandAlle
Nuclick train (Project-MONAI#772)
0d9bde9 
* Draft Training workflow for NuClick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Fix nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* rename transform

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* use monai bunet for nuclick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* fix log

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
Douwe-Spaanderman pushed a commit to Douwe-Spaanderman/MONAILabel that referenced this pull request Dec 9, 2022
@markus-hinsche @SachidanandAlle
@jlvahldiek @diazandr3s
Add NrrdWriter for multi-channel arrays (Project-MONAI#793)
b79a276 
* Only Hide Training area when zero tasks configured (Project-MONAI#769)

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Nuclick train (Project-MONAI#772)

* Draft Training workflow for NuClick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Fix nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* rename transform

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* Sync up changes for nuclick training

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* use monai bunet for nuclick

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>

* fix log

Signed-off-by: Sachidanand Alle <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add NRRD writer

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>
Co-authored-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add unit test for NRRD writer

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Polish

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add labels to data object, Check for label list

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>
Co-authored-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* update docstrings

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* change writer selection

write_seg_nrrd() is only needed for 4D multi-channel label arrays. Everything else can be handled by ITK of nifty writer.

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* polish

write_seg_nrrd() will only be used for 4D multi-channel label arrays. Thus, removed unnecessary code.

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix typo

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add pynrrd==0.4.2 to setup.cfg

Signed-off-by: Markus Hinsche
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* fix check for multi-channel label

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* fix unit test

Signed-off-by: Janis Vahldiek <janis@vahldiek.info>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix multichannel problem

Signed-off-by: Markus Hinsche
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Reformat code

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Make mypy happy

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix merge conflict

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Use logger.warning instead logger.debug

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add Active Learning strategies to DeepEdit (Project-MONAI#782)

* Add Active Learning strategies to DeepEdit

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

* Update readme - commands Active Learning strategies

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Prepare MONAI Label for new monai - DeepEdit transforms (Project-MONAI#781)

* Prepare MONAI Label for new monai - DeepEdit transforms

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

* Add deprecated messages - DeepEdit transforms - interaction

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Mention python versions which are supported (Project-MONAI#786)

Signed-off-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Add original labels option Slicer UI (Project-MONAI#785)

* Add original labels option Slicer UI

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>

* Update Slicer module

Signed-off-by: Andres Diaz-Pinto <diazandr3s@gmail.com>
Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Fix: Check first dimension for multichannel

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

* Polish unit test to be more specific about dimensions

Signed-off-by: Markus Hinsche <m.hinsche@gmail.com>

Co-authored-by: SACHIDANAND ALLE <sachidanand.alle@gmail.com>
Co-authored-by: Janis Vahldiek <janis@vahldiek.info>
Co-authored-by: Andres Diaz-Pinto <diazandr3s@gmail.com>
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@diazandr3s diazandr3s diazandr3s approved these changes

@finalelement finalelement Awaiting requested review from finalelement

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0.4.0 Targeted to Release version 0.4

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Pathology annotation function [p0]

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