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Intron Retention Assessment Using IRFinder

IRFinder Manual

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• Download and Install
• Build Reference
• Trim Adaptors (optional)
• Quantify IR
• IRFinder Output
• Differential IR Analysis
  • No replicates
  • <=2 replicates
  • >=3 replicates via DESeq2 or SUPPA2 wrappers
• Troubleshoot
• Report Bugs