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Cannot locate 'rfd3.trainer.rfd3.AADesignTrainer' when running examples or inference

RFdiffusion3Issues related to RFD3Issues related to RFD3

Status: Open.

#60 In RosettaCommons/foundry;

· wanzihanhan opened on Dec 5, 2025

Enzyme Design Example

questionFurther information is requestedFurther information is requested

RFdiffusion3Issues related to RFD3Issues related to RFD3

Status: Open.

#57 In RosettaCommons/foundry;

· azam-huss opened on Dec 5, 2025

RFD3

bugSomething isn't workingSomething isn't working

RFdiffusion3Issues related to RFD3Issues related to RFD3

Status: Open.

#45 In RosettaCommons/foundry;

· ZhuLvs opened on Dec 4, 2025

<code>models/rfd3/configs/datasets/val/benchmarks</code> Not Found

answered

Foundry SrcIssues related to foundry source code / installation etc.Issues related to foundry source code / installation etc.

Status: Open.

#40 In RosettaCommons/foundry;

· hongningzhang-x opened on Dec 4, 2025

Instructions for generating MSA

questionFurther information is requestedFurther information is requested

RosettaFold3Issues related to RF3Issues related to RF3

Status: Open.

#27 In RosettaCommons/foundry;

· fredricj opened on Dec 2, 2025

dumping PAE matrix

questionFurther information is requestedFurther information is requested

RosettaFold3Issues related to RF3Issues related to RF3

Status: Open.

#25 In RosettaCommons/foundry;

· rpavlovicz opened on Oct 24, 2025

Contact Map for the prediction?

questionFurther information is requestedFurther information is requested

Status: Open.

#24 In RosettaCommons/foundry;

· 1326093445a opened on Oct 22, 2025

InstantiationException: Error in call to target when using sequence with D-amino acid

duplicateThis issue or pull request already existsThis issue or pull request already exists

Status: Open.

#23 In RosettaCommons/foundry;

· tsamdin opened on Oct 21, 2025

Software Security Audit Results

enhancementNew feature or requestNew feature or request

Foundry SrcIssues related to foundry source code / installation etc.Issues related to foundry source code / installation etc.

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#22 In RosettaCommons/foundry;

· TimCraigCGPS opened on Oct 20, 2025

Timeline for training data release

questionFurther information is requestedFurther information is requested

Status: Open.

#21 In RosettaCommons/foundry;

· twidatalla opened on Oct 16, 2025

"skip_existing" option doesn't seem to work

RosettaFold3Issues related to RF3Issues related to RF3

Status: Open.

#20 In RosettaCommons/foundry;

· Yang-Wang-2020 opened on Oct 9, 2025

Using Modelforge -RF3 to test protein folding of sequences containing D-residues in main chain.

RosettaFold3Issues related to RF3Issues related to RF3

Status: Open.

#18 In RosettaCommons/foundry;

· tsamdin opened on Oct 7, 2025