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some issues with list of complete genomes #19

@igortru

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@igortru
  1. I would recommend instead legacy accession use current genbank accessions
    BHU24159 - U24159.1
    SPVDNA - M17988.1
    PFDCG - J02451.1
    PX1CG - J02482.1
    C2PVCG - L48605.1
    LAMCG - J02459.1
    B1U32222 - U32222.1
    B4PORFSX - L35061.1
    PF3COMN - M11912.1
    BL2CG - L13696.1
    PMULEFTEN - M64097.1
    B2U02303 - U02303.1
    BCP1 - D00624.1
    BL5GENM - L06183.1
    PF3COMNY - M19377.1
    F1CCG - J02448.1
    S13CG - M14428.1
    PZACG - M11813.1
    L67CG - L33769.1

  2. If you report as complete genome some wgs contigs, I would recommend scan whole WGS prokaryotic set
    you will find millions complete phages.

FPLJ01000048

for some reason you use protein accesssions
SFU82619 - protein from FPCD01000012.1
CMU41758 - protein from CPLL01000001.1
MPU46938 - protein from VOTU01000050.1
SVU28974 - protein from UIYZ01000003.1

plasmids, I think , in genbank/wgs you can find thousands plasmid-phages, not just sequences provided below
CP052639|| Klebsiella pneumoniae strain E16KP0115 plasmid unnamed|
CP023686||Zymomonas mobilis subsp. mobilis strain ZM4 plasmid pZM41, complete sequence|
CP023680||Zymomonas mobilis subsp. mobilis strain ZM4 plasmid pZM36, complete sequence|
CP038625||Arsenophonus nasoniae strain FIN plasmid pArsFIN13, complete sequence|
CP019275||Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence|
CP006891||Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid, complete sequence|
CP014526||Haematospirillum jordaniae strain H5569 plasmid unnamed 1, complete sequence.|

MZ727334|| UNVERIFIED: Pseudomonas phage PPAT PPATseq3 genomic sequence, sequence|
MZ727333|| UNVERIFIED: Pseudomonas phage PPAT PPATseq2 genomic sequence, sequence|
MZ727332|| UNVERIFIED: Pseudomonas phage PPAT PPATseq1 genomic sequence, sequence|

whole genome is 205 nucleotides
https://www.ncbi.nlm.nih.gov/nuccore/?term=txid2871158[Organism:noexp]

I would recommend switch from individual genbank accessions to ncbi assembly accessions ,almost all genomes in your db have corresponding assembly accessions, some phage genomes are multi segmented or not completely assembled.

If they don't have assembly accession , please, notify me, I'll create them.

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