MDD-GUI

Website for Visualizing the snRNA-seq Profile of the Brodmann Area 9 (BA9) of the Post-Mortem Brain Tissue of 17 Control Subjects and 17 Major Depressive Disorder (MDD) Cases. Clinck the PMID to see the paper more information. PMID: 32341540.

Data Download

Please download the data from this link at below.

Download DATA

The data consisted of two parts: scMDD.obj.exp.all.rds; scMDD.obj.meta.all.rds.
Be sure the data is downloaded and stored in the same directory as app.R and MDD-GUI.Rproj.
And then you can perform the steps in the method.

Method

There is a method to how to run the MDD-GUI website.

1. Click Code button on the top of this page, then click Download ZIP;
2. Unzip the file to your working directory;
3. Double click MDD-GUI.Rproj to open the project;
4. Make sure the renv package is install automatically;

if (!require("renv", quietly = TRUE)) { install.packages("renv") }

5. Next, use renv::restore() to install all other packages which are needed when you first open the MDD-GUI.Rproj in R;
6. Before runApp, please make sure that you download the data which the website needed.
7. If you are using RStudio, just open the app.R in MDD-GUI directory, and click the Run App button to launch the application.
   Or use the commend below to complete the same thing.
   shiny::runApp(appDir = "./")