Modularize settings tab

R/settingsMetadata.R

@@ -8,6 +8,7 @@
 #'    \item{text_key}{Text key indicating the setting name. \code{'--'} delimiter indicates a nested setting}
 #'    \item{label}{Label}
 #'    \item{description}{Description}
+#'    \item{setting_cat}{Setting category (data, measure, appearance)}
 #'    \item{setting_type}{Expected type for setting value. Should be "character", "vector", "numeric" or "logical"}
 #'    \item{setting_required}{Flag indicating if the setting is required}
 #'    \item{column_mapping}{Flag indicating if the setting corresponds to a column in the associated data}

data-raw/settingsMetadata.csv

@@ -1,26 +1,26 @@
-chart_edish,text_key,label,description,setting_type,setting_required,column_mapping,column_type,field_mapping,field_column_key,adam,sdtm
-TRUE,id_col,ID column,Unique subject identifier variable name.,character,TRUE,TRUE,character,FALSE,,USUBJID,USUBJID
-TRUE,value_col,Value column,Lab result variable name.,character,TRUE,TRUE,numeric,FALSE,,AVAL,STRESN
-TRUE,measure_col,Measure column,Lab measure variable name,character,TRUE,TRUE,character,FALSE,,PARAM,TEST
-TRUE,normal_col_low,Lower Limit of Normal column,Lower limit of normal variable name,character,TRUE,TRUE,numeric,FALSE,,A1LO,STNRLO
-TRUE,normal_col_high,Upper Limit of Normal column,Upper limit of normal variable name,character,TRUE,TRUE,numeric,FALSE,,A1HI,STNRHI
-TRUE,studyday_col,Study Day column,Visit day variable name,character,TRUE,TRUE,numeric,FALSE,,ADY,DY
-TRUE,visit_col,Visit column,Visit variable name,character,FALSE,TRUE,character,FALSE,,VISIT,VISIT
-TRUE,visitn_col,Visit Number column,Visit number variable name,character,FALSE,TRUE,numeric,FALSE,,VISITNUM,VISITNUM
-TRUE,filters,Filters columns,"An optional list of specifications for filters. Each filter is a nested, named list (containing the filter value column: 'value_col' and associated label: 'label') within the larger list.",vector,FALSE,TRUE,NA,FALSE,,,
-TRUE,group_cols,Group columns,"An optional list of specifications for grouping columns. Each group column is a nested, named list (containing the group variable column: 'value_col' and associated label: 'label') within the larger list. ",vector,FALSE,TRUE,NA,FALSE,,,
-TRUE,measure_values--ALT,Alanine Aminotransferase value,Value used for Alanine Aminotransferase in the specified measure column,character,TRUE,FALSE,NA,TRUE,measure_col,Alanine Aminotransferase (U/L),"Aminotransferase, alanine (ALT)"
-TRUE,measure_values--AST,Aspartate Aminotransferase value,Value used for Aspartate Aminotransferase in the specified measure column,character,TRUE,FALSE,NA,TRUE,measure_col,Aspartate Aminotransferase (U/L),"Aminotransferase, aspartate (AST)"
-TRUE,measure_values--TB,Total Bilirubin value,Value used for Total Bilirubin in the specified measure column,character,TRUE,FALSE,NA,TRUE,measure_col,Bilirubin (umol/L),Total Bilirubin
-TRUE,measure_values--ALP,Alkaline Phosphatase value,Value used for Alkaline Phosphatase in the specified measure column,character,TRUE,FALSE,NA,TRUE,measure_col,Alkaline Phosphatase (U/L),Alkaline phosphatase (ALP)
-TRUE,baseline--value_col,Baseline column,An optional list defining which column represent the baseline visit(s) of the study.,character,FALSE,TRUE,NA,FALSE,,,
-TRUE,baseline--values,Baseline values,An optional list defining which values (one or more) represent the baseline visit(s) of the study.,vector,FALSE,FALSE,NA,TRUE,baseline--value_col,,
-TRUE,analysisFlag--value_col,Analysis Flag column,An optional list defining which column should be used in eDish and mDish analyses.,character,FALSE,TRUE,NA,FALSE,,,
-TRUE,analysisFlag--values,Analysis Flag values,An optional list defining which values should be used in eDish and mDish analyses.,vector,FALSE,FALSE,NA,TRUE,analysisFlag--value_col,,
-TRUE,x_options,X axis options,"Specifies variable options for the x-axis using the key values from measure_values (e.g. 'ALT'). When multiple options are specified, a control allowing the user to interactively change the x variable is shown. ",vector,FALSE,FALSE,NA,FALSE,,,
-TRUE,y_options,Y axis options,"Specifies variable options for the y-axis using the key values from measure_values (e.g. 'TB'). When multiple options are specified, a control allowing the user to interactively change the y variable is shown. ",vector,FALSE,FALSE,NA,FALSE,,,
-TRUE,visit_window,Default Visit Window in Days ,Default visit window used to highlight eDish points where x and y measures occurred within the specified number of days. Editable by user after render. ,numeric,FALSE,FALSE,NA,FALSE,,,
-TRUE,r_ratio_filter,Show R Ratio Filter?,Specifies whether the R Ratio filter should be shown. R ratio is defined as: (ALT value/ULN for ALT) / (ALP value/ULN for ALP).,logical,FALSE,FALSE,NA,FALSE,,,
-TRUE,r_ratio_cut,Default R Ratio Cut,Default cut point for R Ratio filter. Ignored when r_ratio_filter = FALSE. User can update this setting via the UI when r_ratio_filter = TRUE. ,numeric,FALSE,FALSE,NA,FALSE,,,
-TRUE,showTitle,Show Chart Title? ,Specifies whether the title should be drawn above the controls.,logical,FALSE,FALSE,NA,FALSE,,,
-TRUE,warningText,Warning text,"Informational text to be displayed near the top of the controls (beneath the title, if any). No warning is displayed if warningText = ''. ",Character,FALSE,FALSE,NA,FALSE,,,
+chart_edish,text_key,label,description,setting_type,setting_required,column_mapping,column_type,field_mapping,field_column_key,adam,sdtm,setting_cat
+TRUE,id_col,ID column,Unique subject identifier variable name.,character,TRUE,TRUE,character,FALSE,,USUBJID,USUBJID,data
+TRUE,value_col,Value column,Lab result variable name.,character,TRUE,TRUE,numeric,FALSE,,AVAL,STRESN,data
+TRUE,measure_col,Measure column,Lab measure variable name,character,TRUE,TRUE,character,FALSE,,PARAM,TEST,data
+TRUE,measure_values--ALT,Alanine Aminotransferase value,Value used for Alanine Aminotransferase in the specified measure column,character,TRUE,FALSE,NA,TRUE,measure_col,Alanine Aminotransferase (U/L),"Aminotransferase, alanine (ALT)",data
+TRUE,measure_values--AST,Aspartate Aminotransferase value,Value used for Aspartate Aminotransferase in the specified measure column,character,TRUE,FALSE,NA,TRUE,measure_col,Aspartate Aminotransferase (U/L),"Aminotransferase, aspartate (AST)",data
+TRUE,measure_values--TB,Total Bilirubin value,Value used for Total Bilirubin in the specified measure column,character,TRUE,FALSE,NA,TRUE,measure_col,Bilirubin (umol/L),Total Bilirubin,data
+TRUE,measure_values--ALP,Alkaline Phosphatase value,Value used for Alkaline Phosphatase in the specified measure column,character,TRUE,FALSE,NA,TRUE,measure_col,Alkaline Phosphatase (U/L),Alkaline phosphatase (ALP),data
+TRUE,normal_col_low,Lower Limit of Normal column,Lower limit of normal variable name,character,TRUE,TRUE,numeric,FALSE,,A1LO,STNRLO,data
+TRUE,normal_col_high,Upper Limit of Normal column,Upper limit of normal variable name,character,TRUE,TRUE,numeric,FALSE,,A1HI,STNRHI,data
+TRUE,studyday_col,Study Day column,Visit day variable name,character,TRUE,TRUE,numeric,FALSE,,ADY,DY,data
+TRUE,visit_col,Visit column,Visit variable name,character,FALSE,TRUE,character,FALSE,,VISIT,VISIT,data
+TRUE,visitn_col,Visit Number column,Visit number variable name,character,FALSE,TRUE,numeric,FALSE,,VISITNUM,VISITNUM,data
+TRUE,filters,Filters columns,"An optional list of specifications for filters. Each filter is a nested, named list (containing the filter value column: 'value_col' and associated label: 'label') within the larger list.",vector,FALSE,TRUE,NA,FALSE,,,,data
+TRUE,group_cols,Group columns,"An optional list of specifications for grouping columns. Each group column is a nested, named list (containing the group variable column: 'value_col' and associated label: 'label') within the larger list. ",vector,FALSE,TRUE,NA,FALSE,,,,data
+TRUE,baseline--value_col,Baseline column,An optional list defining which column represent the baseline visit(s) of the study.,character,FALSE,TRUE,NA,FALSE,,,,data
+TRUE,baseline--values,Baseline values,An optional list defining which values (one or more) represent the baseline visit(s) of the study.,vector,FALSE,FALSE,NA,TRUE,baseline--value_col,,,data
+TRUE,analysisFlag--value_col,Analysis Flag column,An optional list defining which column should be used in eDish and mDish analyses.,character,FALSE,TRUE,NA,FALSE,,,,data
+TRUE,analysisFlag--values,Analysis Flag values,An optional list defining which values should be used in eDish and mDish analyses.,vector,FALSE,FALSE,NA,TRUE,analysisFlag--value_col,,,data
+TRUE,x_options,X axis options,"Specifies variable options for the x-axis using the key values from measure_values (e.g. 'ALT'). When multiple options are specified, a control allowing the user to interactively change the x variable is shown. ",vector,FALSE,FALSE,NA,FALSE,,,,measure
+TRUE,y_options,Y axis options,"Specifies variable options for the y-axis using the key values from measure_values (e.g. 'TB'). When multiple options are specified, a control allowing the user to interactively change the y variable is shown. ",vector,FALSE,FALSE,NA,FALSE,,,,measure
+TRUE,visit_window,Default Visit Window in Days ,Default visit window used to highlight eDish points where x and y measures occurred within the specified number of days. Editable by user after render. ,numeric,FALSE,FALSE,NA,FALSE,,,,appearance
+TRUE,r_ratio_filter,Show R Ratio Filter?,Specifies whether the R Ratio filter should be shown. R ratio is defined as: (ALT value/ULN for ALT) / (ALP value/ULN for ALP).,logical,FALSE,FALSE,NA,FALSE,,,,appearance
+TRUE,r_ratio_cut,Default R Ratio Cut,Default cut point for R Ratio filter. Ignored when r_ratio_filter = FALSE. User can update this setting via the UI when r_ratio_filter = TRUE. ,numeric,FALSE,FALSE,NA,FALSE,,,,appearance
+TRUE,showTitle,Show Chart Title? ,Specifies whether the title should be drawn above the controls.,logical,FALSE,FALSE,NA,FALSE,,,,appearance
+TRUE,warningText,Warning text,"Informational text to be displayed near the top of the controls (beneath the title, if any). No warning is displayed if warningText = ''. ",character,FALSE,FALSE,NA,FALSE,,,,appearance