Include adapter trimming and optional primer removal #37
Description
The only pre-processing on the FASTQ files absolutely required before running CHIIMP is adapter trimming, so if we can bundle this step into the package, it will be able to operate on output directly from a sequencing run.
We may as well also provide an option to strip out the PCR primers late in the processing, which would make the output more in line with what some users may expect and what MEGASAT produces.