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The pwd behavior looks to be the same between Linux and Mac OS (unlike for readlink) so this should work on both.
We're not developing a bioconductor package
The devel build URL is out of date for osx.
Merged
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This changes the Travis configuration and demo scripts to work on OS X. The R package and desktop shortcut already did, but this will enable automated testing as on Linux.
pwd -Prather thanreadlink -ffor determining canonical paths in the demo scriptsosxin the Travis configuration but excludes the devel R build which has known problems for Travis' osx