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Description
Hi,
When I tried to run the pathway activity analysis using example data. I encountered a error as follow:
pathway.hyper.list <- lapply(colnames(n), function(i){
print(i)
tmp <- getHyperPathway(data = n, object = mt, cella_cellb = i, Org="Homo sapiens")
return(tmp)
})
Error in parse(text = elt) : :1:7: unexpected symbol
1: Using an
^
Does anyone has any idea what cause this error? Thanks in advance.
BTW, my sessioninfo is:
R version 3.6.3 (2020-02-29)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19045)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods
[7] base
other attached packages:
[1] stringi_1.7.8 forcats_0.5.2 dplyr_1.0.9 purrr_0.3.4
[5] readr_2.1.2 tidyr_1.2.0 tibble_3.1.8 ggplot2_3.3.6
[9] tidyverse_1.3.2 networkD3_0.4 stringr_1.4.1 cellcall_1.0.7