Develop to main#13

Merged

alxbilger merged 667 commits intoSofaDefrost:mainfrom

alxbilger:develop_to_main

May 16, 2025

This pull request is big! We're only showing the most recent 250 commits

Commits on Jul 8, 2012

improving polar decomposition by scaling down the computed angle
nyoxi
committed

Commits on Jul 9, 2012

changing SCA 2012 to Vriphys 2012
nyoxi
committed
changing from SCA 2012 to Vriphys 2012
nyoxi
committed

Commits on Jul 11, 2012

update old scenes
duriez
committed

Commits on Jul 13, 2012

more on the article
nyoxi
committed
fixing a figure
nyoxi
committed

Commits on Jul 15, 2012

Doxygen documentation
duriez
committed

Commits on Jul 18, 2012

more on the article
nyoxi
committed
setting svn:ignore property
nyoxi
committed
using 6 Gauss point quadrature for bending element
nyoxi
committed
modifs in intro
duriez
committed

Commits on Jul 19, 2012

reorganizing sections 2 and 3, adding more stuff to sec. 2
nyoxi
committed

Commits on Jul 20, 2012

modifs & comments
duriez
committed

Commits on Jul 25, 2012

more on article
nyoxi
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finishing section 2
nyoxi
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Commits on Jul 27, 2012

article
nyoxi
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Commits on Jul 29, 2012

comments and some update
duriez
committed
begin of something in section 3.1
duriez
committed
trying new image for membrane/bending deformations
nyoxi
committed

Commits on Jul 30, 2012

section 3.1
duriez
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section 3
duriez
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small changes in section 3
duriez
committed

Commits on Jul 31, 2012

Commits on Aug 1, 2012

fixing FPS for the test (only visual mapping)
nyoxi
committed
sections 3, 4 and most of 5
nyoxi
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Commits on Aug 2, 2012

spell check
nyoxi
committed
cropping images
nyoxi
committed
application on the birth simulation
nyoxi
committed
abstract
duriez
committed
changes in sections 6 and 7
duriez
committed
proofread of section 4
duriez
committed
proofread of section 5
duriez
committed
small corrections
nyoxi
committed

Commits on Aug 3, 2012

changes to fit into 10 page limit
nyoxi
committed
adding paper outline to introduction
nyoxi
committed

Commits on Aug 6, 2012

Precomputing shape functions; removing typing problem with call to apply* functions
nyoxi
committed

Commits on Sep 6, 2012

drawing strain/stress at each gausspoint -- initial skeleton
nyoxi
committed

Commits on Sep 7, 2012

Commits on Sep 13, 2012

using von Mises stress criterion to evaluate stress vallues, included bending
nyoxi
committed

Commits on Sep 20, 2012

Dossier papier afig
jbosman
committed
Corrections + figure
jbosman
committed
Ajout intro et corrections
jbosman
committed

Commits on Sep 21, 2012

Papier version finale + figures
jbosman
committed

Commits on Oct 8, 2012

final version of VRIPHYS paper
nyoxi
committed

Commits on Oct 9, 2012

fixing invalid line; removing unused files
nyoxi
committed

Commits on Oct 12, 2012

Commits on Oct 23, 2012

optimization based smoothing
nyoxi
committed

Commits on Oct 24, 2012

Afig paper removed (non longer needed)
jbosman
committed

Commits on Oct 26, 2012

Implementation of smoothing algorithm by Pain et al.
nyoxi
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Commits on Oct 30, 2012

compute values at nodes
nyoxi
committed

Commits on Nov 9, 2012

CUDA implementation of Laplacian smoothing
nyoxi
committed

Commits on Nov 12, 2012

CUDA implementation of optimization based smoothin
nyoxi
committed

Commits on Nov 19, 2012

Commits on Nov 20, 2012

making CUDA optional
nyoxi
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Commits on Nov 22, 2012

fixing comments (for doxygen)
nyoxi
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Commits on Nov 23, 2012

- Having both boundary and fixed nodes (allowing boundary nodes to move).
nyoxi
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Commits on Nov 27, 2012

fixing #includes
nyoxi
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Computing stress/strain on mapped topology
nyoxi
committed
using DataDisplay to draw stress
nyoxi
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Commits on Nov 30, 2012

reattach point to avoid degenerated elements
nyoxi
committed
preparing for the adaptive cutting
nyoxi
committed

Commits on Dec 4, 2012

more work on the cutting framework (little bit broken now)
nyoxi
committed

Commits on Dec 5, 2012

more on the cutting
nyoxi
committed

Commits on Dec 12, 2012

first working version of cutting support (not yet perfect though)
nyoxi
committed

Commits on Dec 13, 2012

small fixes to cutting, fixed boundary recheck
nyoxi
committed

Commits on Jan 11, 2013

fixing compilation with new Sofa
nyoxi
committed

Commits on Jan 16, 2013

Commits on Jan 17, 2013

- removing distinction between tracked and "last seen" point position
nyoxi
committed

Commits on Jan 21, 2013

adding class for projection of points on surface
nyoxi
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handling point projection during adaptivity
nyoxi
committed
removing CUDA classes from build (broken)
nyoxi
committed

Commits on Jan 23, 2013

fixing some cut-point selection problems
nyoxi
committed

Commits on Jan 25, 2013

fixing computation of stress/strain
nyoxi
committed
implementing edge swapping operation
nyoxi
committed

Commits on Jan 28, 2013

Refactoring adaptive cutting into separate component
nyoxi
committed
adding mesh
nyoxi
committed

Commits on Jan 29, 2013

Added edge protection code and tracked point swapping method to complete the refactoring.
nyoxi
committed
bugfix
nyoxi
committed
fixing compilation
nyoxi
committed
removing unwanted property svn:mime-type
nyoxi
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Commits on Feb 6, 2013

scenes combining tetrahedral forcefield with shells
nyoxi
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Commits on Feb 11, 2013

scenes
nyoxi
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scenes
nyoxi
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scenes
nyoxi
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Commits on Feb 17, 2013

renaming old directory
nyoxi
committed

Commits on Feb 18, 2013

Commits on Feb 20, 2013

scenes for liver with capsule
nyoxi
committed
fixing path
nyoxi
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Commits on Feb 21, 2013

more on the miccai paper
nyoxi
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Commits on Feb 25, 2013

first version fo aspiration test and results
nyoxi
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Commits on Feb 26, 2013

missing mesh file
nyoxi
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abstract v1.0
duriez
committed

Commits on Feb 27, 2013

more on the miccai paper
nyoxi
committed
the paper
nyoxi
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aspiration test
nyoxi
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fixing the solver
nyoxi
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Commits on Feb 28, 2013

fixing the aspiration test
nyoxi
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few comments
duriez
committed
ADD: the effect of the force field applied gradually
igor
committed
paper
nyoxi
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CHANGE: allowing for both increasin and decreasing the effect of the forcefield
igor
committed
ADD: introduction
igor
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paper: intro, intro to experiments
nyoxi
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ADD and CHANGE: some additions and modifications in Model -- Parenchyma and Vascularization
igor
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ADD: overview of "Global deformations" section
igor
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bibliography, comments, figures for aspiration
nyoxi
committed

Commits on Mar 1, 2013

TEMPORARY: aspiration.jpg => aspiration.pdf to compile the TeX. Aspiration.jpg needed!
igor
committed
adding missing file
nyoxi
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REVERT: pdf => jpg
igor
committed
FIX: small fixes in the introduction
igor
committed
fixing the plot and screenshots
nyoxi
committed
membrane stiffness matrix
nyoxi
committed
adding references
nyoxi
committed
ADD: graph showing the force evoluation when adding the membrane
igor
committed
paper outline
nyoxi
committed
liver under gravity
nyoxi
committed
changing stiffness of parenchyma
nyoxi
committed
small changes
nyoxi
committed
ADD: part of the global deformation section plus images
igor
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ADD: global deformations finished
igor
committed
CHANGE: small modifications in Local Deformations section
igor
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CHANGE: negligible modification of title
igor
committed
adding figure caption
nyoxi
committed
removing unnecessary info to make citations shorter
nyoxi
committed
removing unnecessary stuff to make it shorter; correcting insitutions
nyoxi
committed

Commits on Mar 2, 2013

CHANGE: new version of abstract, small modifications in introduction
igor
committed
ADD: small changes in the text
igor
committed
small fixes
nyoxi
committed
spell check, homogenized figure captions
nyoxi
committed
small changes
igor
committed
small changes
igor
committed
final fix
nyoxi
committed
CHANGE: two important modifs: new mesh sizes and frame rate, max. Hausdorff distance modified
igor
committed
FIX: English and small typos
igor
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CHANGE: conclusions
igor
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Commits on Mar 5, 2013

Commits on Mar 7, 2013

changes for miccai
nyoxi
committed

Commits on Mar 8, 2013

small cleanups
nyoxi
committed
introducint metric tensor
nyoxi
committed

Commits on Mar 11, 2013

CHANGE: removed obsolete parameters
igor
committed

Commits on Mar 25, 2013

small cleanup
nyoxi
committed
adding some form of projection onto surface
nyoxi
committed
adapting parametrization to changes in topology (point relocation)
nyoxi
committed

Commits on Mar 27, 2013

moving optimization related code to seprate class
nyoxi
committed

Commits on Mar 30, 2013

modified optimization to use parametrized surface
nyoxi
committed

Commits on Apr 11, 2013

framework for metric tensors
nyoxi
committed

Commits on May 21, 2013

Paper for VRST 2013 (reworked miccai 2013 paper)
nyoxi
committed

Commits on May 28, 2013

FIX: caption bug and affiliations
igor
committed
removing vascularization and global deformations
nyoxi
committed

Commits on May 29, 2013

vrst2013: aspiration test
nyoxi
committed

Commits on May 30, 2013

vrst2013: more changes
nyoxi
committed
more fixes in the paper
nyoxi
committed

Commits on May 31, 2013

reorganizing sections
nyoxi
committed
ADD: abstract
igor
committed
ADD: some reformulations in section 3 and 4
igor
committed
ADD: citations and further fixes
igor
committed
ADD: reformulation in 4. chapter
igor
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displacement evolution
nyoxi
committed
further reformulations
igor
committed
ADD: figure
igor
committed
fixing the figure
nyoxi
committed
FIX: i7 CPU
igor
committed
FIX: conclusions
igor
committed
updating values in figure
nyoxi
committed
categories, term, keywords
nyoxi
committed
final fixes
nyoxi
committed
changing the time range
nyoxi
committed

Commits on Jun 13, 2013

moving mapping related code into another interpolation component
nyoxi
committed

Commits on Jun 18, 2013

implementing applyJT for constraints (not sure it's working though)
nyoxi
committed

Commits on Jun 19, 2013

commited wrong version of applyJT
nyoxi
committed

Commits on Jun 26, 2013

preparing MEDIA paper
nyoxi
committed

Commits on Jul 2, 2013

aspiration test
nyoxi
committed

Commits on Jul 28, 2013

adding doxygen documentation
nyoxi
committed
using acmsiggraph class
nyoxi
committed

Commits on Jul 29, 2013

fixing some issues
nyoxi
committed
FIX: typos
igor
committed

Commits on Jul 31, 2013

MMVR 2014 paper - 4 pages
stephane
committed

Commits on Aug 1, 2013

Commits on Aug 2, 2013

FIX: finalization of the paper
igor
committed

Commits on Oct 13, 2013

CMakeLists added for shell plugin. Testing required and feedback is welcome
jbosman
committed

Commits on Oct 28, 2013

Commits on Nov 5, 2013

Commits on Nov 6, 2013

ADD: new scenes for MMVR validation
igor
committed

Commits on Apr 9, 2014

fix compilation problems (with cmake): change 'method()' by 'this->method()' and include missing file
majorczyk
committed

Commits on Nov 18, 2015

Updated component to match new method signatures and deprecations.
jbosman
committed

Commits on Feb 22, 2016

tentative update of Cmakelist to match SOFA changes
ogoury
committed
Fix build with new sofa buildsystem
bcarrez
committed

Commits on Oct 28, 2016

Fix bugs to work with current sofa version
ogoury
committed

Commits on Jun 19, 2017

FIX= small corrections on scene files
ChristianDuriez
committed

Commits on Sep 1, 2017

Commits on Sep 8, 2017

ADD: ongoing work on ApplyJt for MatrixDeriv
ChristianDuriez
committed

Commits on Nov 30, 2018

olivier-goury
committed

Commits on Jan 11, 2019

olivier-goury
committed

Commits on Feb 3, 2020

Commits on Feb 4, 2020

Commits on Mar 17, 2021

Fix compilation with master 20210317
hugtalbot
committed

Commits on Mar 18, 2021

update the CmakeList according to Sofa code
adagolodjo
committed
Merge branch 'fixCMakeList' into 'master'
ADAGOLODJO Yinoussa
committed

Commits on Mar 24, 2021

remove the now-private propagateTopologicalChanges
hugtalbot
committed

Commits on Aug 17, 2021

Commits on Nov 4, 2021

Merge branch 'update_v2106' into 'master'
TALBOT Hugo
committed

Commits on Feb 17, 2023

Commits on Feb 20, 2023

Merge branch 'pr_fixcompilation' into 'master'
TALBOT Hugo
committed

Commits on Feb 21, 2023

Commits on Feb 28, 2023

Commits on Jun 13, 2023

update the Triangular Shell ForceField scene
adagolodjo
committed

Commits on Oct 11, 2023

Commits on Dec 3, 2023

Update data name in forcefield component.
adagolodjo
committed

Commits on Apr 24, 2024

add ShellsAndBeams, SceneCochlea folder to the pluging
adagolodjo
committed

Commits on Apr 25, 2024

Enhancement: Add Support for rest state in TriangularShellForceField Component
adagolodjo
committed

Commits on Aug 22, 2024

update the code in order to compile with Sofa master
adagolodjo
committed

Commits on Oct 23, 2024

Commits on Apr 30, 2025

Cleanup the plugin and fix compilation (#12)
alxbilger
authored

Commits on May 6, 2025

[Examples] Clean xml examples from folder combo/miccai2013 (#11)

Lucas-TJ
and
Lucas Burel
authored

Commits on May 7, 2025

Remove superfluous files for a merge of develop into the main branch
alxbilger
committed