StochSS · briandrawert · Jun 6, 2022 · May 20, 2022 · May 20, 2022 · May 20, 2022
diff --git a/.github/workflows/run-integration-tests.yml b/.github/workflows/run-integration-tests.yml
@@ -27,4 +27,4 @@ jobs:
         python3 -m pip install coverage
 
     - name: Run tests
-      run: coverage run test/run_integration_tests.py
+      run: coverage run --source=spatialpy test/run_integration_tests.py
diff --git a/.github/workflows/run-unit-tests.yml b/.github/workflows/run-unit-tests.yml
@@ -25,4 +25,4 @@ jobs:
         python3 -m pip install coverage
 
     - name: Run tests
-      run: coverage run test/run_unit_tests.py
+      run: coverage run --source=spatialpy test/run_unit_tests.py
diff --git a/run_coverage.sh b/run_coverage.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+#pip3 install  coverage
+#pip3 install python-libsbml
+
+coverage run --source=spatialpy test/run_unit_tests.py -m develop
+coverage run --source=spatialpy test/run_integration_tests.py -m develop
+coverage html
diff --git a/test/run_unit_tests.py b/test/run_unit_tests.py
@@ -28,9 +28,9 @@
         print('Running unit tests in develop mode. Appending repository directory to system path.')
         sys.path.append(os.path.join(os.path.dirname(__file__), '..'))
 
-    import test_species
-    import test_parameter
-    import test_reaction
+    from unit_tests import test_species
+    from unit_tests import test_parameter
+    from unit_tests import test_reaction
 
     modules = [
         test_species,

diff --git a/test/unit_tests/__init__.py b/test/unit_tests/__init__.py
diff --git a/test/test_parameter.py → test/unit_tests/test_parameter.py b/test/test_parameter.py → test/unit_tests/test_parameter.py
diff --git a/test/test_reaction.py → test/unit_tests/test_reaction.py b/test/test_reaction.py → test/unit_tests/test_reaction.py
diff --git a/test/test_species.py → test/unit_tests/test_species.py b/test/test_species.py → test/unit_tests/test_species.py