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Updates to the Model and Reaction modules #271

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Merged
seanebum merged 15 commits into from
Jun 7, 2022
Merged

Updates to the Model and Reaction modules #271

seanebum merged 15 commits into from
Jun 7, 2022

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@BryanRumsey
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@BryanRumsey BryanRumsey commented May 25, 2022

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@BryanRumsey BryanRumsey added the enhancement New feature or request label May 25, 2022
@BryanRumsey BryanRumsey added this to the 1.0.3 Release milestone May 25, 2022
@BryanRumsey BryanRumsey self-assigned this May 25, 2022
@BryanRumsey BryanRumsey changed the base branch from main to develop May 25, 2022 15:57
@BryanRumsey BryanRumsey marked this pull request as draft May 25, 2022 15:59
BryanRumsey and others added 13 commits May 25, 2022 12:46
@BryanRumsey
Moved imports to the top of the model module.
9afb31c
@BryanRumsey
Updated Model.update_namespace().
efc1e21
@BryanRumsey
Refactored and re-organized the component functions. Added missing co…
56fa78d 
…mponent functions. Added a __getitem__ function. Added resolve functions for parameters and reactions.
@BryanRumsey
Fixed issue in solver caused by the change in the data functions data…
b47ee66 
… structure.
@BryanRumsey
Refactored the reaction class to be more consistent with GillesPy2.Re…
5c51d77 
…action.
@BryanRumsey
Refactored the unit test to cover the changes in reaction.py.
bcb8c18
@BryanRumsey
Resolved merge conflicts.
27e6a4f
@BryanRumsey
Merge branch 'update-model-reaction' of https://github.com/StochSS/Sp…
d4982ff 
…atialPy into update-model-module
@BryanRumsey
Merge branch 'update-model-reaction' of https://github.com/StochSS/Sp…
8d592de 
…atialPy into update-reaction-module
@BryanRumsey
Merge branch 'develop' of https://github.com/StochSS/SpatialPy into u…
3ade2f7 
…pdate-model-reaction
@briandrawert
Merge pull request #272 from StochSS/update-model-module
e032174 
Update model module
@briandrawert
Merge pull request #273 from StochSS/update-reaction-module
b9121f2 
Update reaction module
@BryanRumsey
Added missing functions to reaction bug and fixed issue with resolvin…
8425322 
…g reactions.
@BryanRumsey BryanRumsey marked this pull request as ready for review June 6, 2022 17:50
@seanebum seanebum merged commit 246661f into develop Jun 7, 2022
@seanebum seanebum deleted the update-model-reaction branch June 7, 2022 12:37
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@briandrawert briandrawert briandrawert approved these changes

@seanebum seanebum seanebum approved these changes

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@BryanRumsey BryanRumsey

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enhancement New feature or request

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@BryanRumsey @briandrawert @seanebum