update ecMouseGEM based on 2021-04-06-14-59

config.ini

@@ -1,10 +1,10 @@
 [BASE]
 url = https://github.com/SysBioChalmers/ecModels
-pull_request_target = feat/update_all_ecModels
+pull_request_target = master
 install_dir = /home/m/ecModels-dependencies/
 
 [MATLAB]
-version = R2018b
+version = 3
 
 [COBRA]
 url = https://github.com/opencobra/cobratoolbox
@@ -23,61 +23,22 @@ install_dir = libSBML/
 
 [Gurobi]
 url = https://www.gurobi.com/downloads/gurobi-software/
-version = v8.1.1
+version = v9.1.1
 install_dir = gurobi/
 
 [GECKO]
 url = https://github.com/SysBioChalmers/GECKO
-version = v2.0.1
+version = v2.0.2
 install_dir = GECKO/
 branch = devel
 
-[ecYeastGEM]
+[ecMouseGEM]
 type = 'gem'
-url = https://github.com/SysBioChalmers/yeast-GEM
-download_url =
-model_filename = /ModelFiles/mat/yeastGEM.mat
-mat_model = .model
-install_dir = yeast-GEM
-version = v8.3.1
-database_tag = sce
+url = 
+download_url = https://raw.githubusercontent.com/SysBioChalmers/Mouse-GEM/test4GECKO/model/Mouse-GEM.mat
+model_filename = /Mouse-GEM.mat
+mat_model = .mouseGEM
+install_dir = Mouse-GEM
+version = 2021-04-06-14-59
+database_tag = mmu
 
-[eciYali]
-type = 'gem'
-url = https://github.com/SysBioChalmers/Yarrowia_lipolytica_W29-GEM
-download_url =
-model_filename = /ModelFiles/mat/iYali.mat
-mat_model = .model
-install_dir = Yali-GEM
-version = v0
-database_tag = yli
-
-[eciSM966]
-type = 'gem'
-url = https://github.com/SysBioChalmers/Kluyveromyces_marxianus-GEM
-download_url =
-model_filename = /modelFiles/mat/Kluyveromyces_marxianus-GEM.mat
-mat_model = .model
-install_dir = iSM966
-version = v0
-database_tag = kmx
-
-[eciML1515]
-type = 'gem'
-url =
-download_url = http://bigg.ucsd.edu/static/models/iML1515.xml
-model_filename = /iML1515.xml
-mat_model = 
-install_dir = iML1515
-version = v0
-database_tag = eco
-
-[ecHumanGEM]
-type = 'gem'
-url = https://github.com/SysBioChalmers/Human-GEM
-download_url =
-model_filename = /model/Human-GEM.mat
-mat_model = .ihuman
-install_dir = Human-GEM
-version = v0
-database_tag = hsa

ecHumanGEM/scripts/changeMedia_batch.m

@@ -1,10 +1,10 @@
 function exchModel = changeMedia_batch(model,cSource,irrev,measuredMets,fluxes)
 % changeMedia_batch
 %
-% Set a Hams culture medium for a humanGEM based model. This function works
+% Set a Hams culture medium for a Human-GEM based model. This function works
 % for either standard or enzyme constrained-GEMs
 %
-%   model           An ihuman-based GEM
+%   model           An Human-GEM based model
 %   irrev           (logical) TRUE if model comes in an irreversible format.
 %                   Default = false
 %   measuredMets    (string) metNames for measured compounds. Optional