[fix]: prefer node_modules over stale PnP state

.changeset/violet-lies-hide.md

@@ -0,0 +1,5 @@
+---
+'@tanstack/intent': patch
+---
+
+Fix `intent list` in projects with stale Yarn PnP files alongside project `node_modules`, including Bun isolated installs. Intent now prefers project `node_modules` when it exists and only loads Yarn's PnP API for PnP projects without `node_modules`.

docs/cli/intent-list.md

@@ -96,10 +96,10 @@ When both local and global packages are scanned, local packages take precedence.
 
 `packages` are ordered using `intent.requires` when possible.
 When the same package exists both locally and globally and global scanning is enabled, `intent list` prefers the local package.
+When project `node_modules` exists, `intent list` scans it. In Yarn PnP projects without `node_modules`, `intent list` uses Yarn's PnP API.
 
 ## Common errors
 
 - Scanner failures are printed as errors
 - Unsupported environments:
-  - Yarn PnP without `node_modules`
   - Deno projects without `node_modules`

docs/overview.md

@@ -30,7 +30,7 @@ Intent provides tooling for two workflows:
 npx @tanstack/intent@latest list
 ```
 
-Scans the current project's `node_modules` and workspace dependencies for intent-enabled packages.
+Scans the current project's installed dependencies for intent-enabled packages, including `node_modules`, workspace dependencies, and Yarn PnP projects without `node_modules`.
 Global package scanning is explicit; pass `--global` to include global packages or `--global-only` to ignore local packages.
 When both local and global packages are scanned, local packages take precedence.
 

packages/intent/README.md

@@ -104,7 +104,7 @@ npx @tanstack/intent@latest setup
 | Node.js + pnpm | Supported   | Use `pnpm dlx @tanstack/intent@latest <command>`   |
 | Node.js + Bun  | Supported   | Use `bunx @tanstack/intent@latest <command>`       |
 | Deno           | Best-effort | Requires `npm:` interop and `node_modules` support |
-| Yarn PnP       | Unsupported | `@tanstack/intent` scans `node_modules`            |
+| Yarn PnP       | Supported   | Uses Yarn's PnP API when `node_modules` is absent  |
 
 ## Monorepos
 

packages/intent/src/scanner.ts

@@ -416,7 +416,6 @@ export function scanForIntents(
   const projectRoot = root ?? process.cwd()
   const scanScope = getScanScope(options)
   const packageManager = detectPackageManager(projectRoot)
-  const pnpApi = scanScope === 'global' ? null : loadPnpApi(projectRoot)
   const nodeModulesDir = join(projectRoot, 'node_modules')
   const explicitGlobalNodeModules =
     process.env.INTENT_GLOBAL_NODE_MODULES?.trim() || null
@@ -450,6 +449,15 @@ export function scanForIntents(
     string,
     Map<string, { version: string; packageRoot: string }>
   >()
+  let pnpApi: PnpApi | null | undefined
+
+  function getPnpApi(): PnpApi | null {
+    if (scanScope === 'global') return null
+    if (pnpApi === undefined) {
+      pnpApi = loadPnpApi(projectRoot)
+    }
+    return pnpApi
+  }
 
   function rememberVariant(pkg: IntentPackage): void {
     let variants = packageVariants.get(pkg.name)
@@ -515,10 +523,7 @@ export function scanForIntents(
       warnings,
     })
 
-  function scanPnpPackages(): void {
-    if (!pnpApi) return
-
-    const api = pnpApi
+  function scanPnpPackages(api: PnpApi): void {
     const visited = new Set<string>()
     const workspaceRoot = findWorkspaceRoot(projectRoot)
     const projectLocator = api.findPackageLocator?.(
@@ -556,9 +561,12 @@ export function scanForIntents(
   }
 
   function scanLocalPackages(): void {
-    if (pnpApi && !nodeModules.local.exists) {
-      scanPnpPackages()
-      return
+    if (!nodeModules.local.exists) {
+      const api = getPnpApi()
+      if (api) {
+        scanPnpPackages(api)
+        return
+      }
     }
 
     assertLocalNodeModulesSupported(projectRoot)

packages/intent/tests/scanner.test.ts

@@ -669,6 +669,89 @@ describe('scanForIntents', () => {
     expect(result.packages[0]!.name).toBe('skills-pkg')
   })
 
+  it('prefers project node_modules over stale PnP state', () => {
+    const missingPkgJson = join(
+      root,
+      '.yarn',
+      'cache',
+      'bun-wrapper.zip',
+      'node_modules',
+      'bun-wrapper',
+      'package.json',
+    )
+
+    writeJson(join(root, 'package.json'), {
+      name: 'app',
+      private: true,
+      dependencies: { 'bun-wrapper': '1.0.0' },
+    })
+    writeFileSync(
+      join(root, '.pnp.cjs'),
+      [
+        "const Module = require('node:module')",
+        `const missingPkgJson = ${JSON.stringify(missingPkgJson)}`,
+        'module.exports = {',
+        '  setup() {',
+        '    const originalResolve = Module._resolveFilename',
+        '    Module._resolveFilename = function(request, parent, isMain, options) {',
+        "      if (request === 'bun-wrapper/package.json') return missingPkgJson",
+        '      return originalResolve.call(this, request, parent, isMain, options)',
+        '    }',
+        '  },',
+        '  getDependencyTreeRoots() { return [] },',
+        '  getPackageInformation() { return null },',
+        '}',
+        '',
+      ].join('\n'),
+    )
+
+    const wrapperDir = createDir(
+      root,
+      'node_modules',
+      '.bun',
+      'bun-wrapper@1.0.0',
+      'node_modules',
+      'bun-wrapper',
+    )
+    writeJson(join(wrapperDir, 'package.json'), {
+      name: 'bun-wrapper',
+      version: '1.0.0',
+      dependencies: { 'bun-skills-pkg': '1.0.0' },
+    })
+
+    const skillsPkgDir = createDir(
+      root,
+      'node_modules',
+      '.bun',
+      'bun-skills-pkg@1.0.0',
+      'node_modules',
+      'bun-skills-pkg',
+    )
+    writeJson(join(skillsPkgDir, 'package.json'), {
+      name: 'bun-skills-pkg',
+      version: '1.0.0',
+      intent: { version: 1, repo: 'test/skills', docs: 'https://example.com' },
+    })
+    writeSkillMd(createDir(skillsPkgDir, 'skills', 'core'), {
+      name: 'core',
+      description: 'Core skill',
+    })
+
+    createDir(root, 'node_modules')
+    symlinkSync(wrapperDir, join(root, 'node_modules', 'bun-wrapper'))
+    createDir(wrapperDir, 'node_modules')
+    symlinkSync(
+      skillsPkgDir,
+      join(wrapperDir, 'node_modules', 'bun-skills-pkg'),
+    )
+
+    const result = scanForIntents(root)
+
+    expect(result.packages).toHaveLength(1)
+    expect(result.packages[0]!.name).toBe('bun-skills-pkg')
+    expect(result.warnings).toEqual([])
+  })
+
   it('discovers skills using package.json workspaces', () => {
     writeJson(join(root, 'package.json'), {
       name: 'monorepo',