ToFuProject · Didou09 · Sep 27, 2019 · Sep 13, 2019 · Sep 13, 2019 · Sep 13, 2019
diff --git a/.gitignore b/.gitignore
@@ -7,6 +7,8 @@
 *.c
 *.cpp
 *.nfs*
+
+# annotated files
 tofu/geom/*.html
 
 # No images
@@ -38,22 +40,19 @@ dist/
 tofu.egg-info/
 build/
 
-#Notes_Upgrades/
-
 # Tex files
 *.aux
 *.log
 
-# .gitignore
-1
-Introduction
-computing
-Details
+# coverage output
 .coverage
 
 # Include travis
 !.travis.yml
 
+# no precommit configurations
+.pre-commit-config.yaml
+
 # installation dir
 usr/
 

diff --git a/doc/Makefile b/doc/Makefile
@@ -5,7 +5,7 @@
 SPHINXOPTS    =
 SPHINXBUILD   = sphinx-build
 PAPER         =
-BUILDDIR      = build
+BUILDDIR      = ../../test_doc/tofu
 
 # Internal variables.
 PAPEROPT_a4     = -D latex_paper_size=a4
@@ -39,12 +39,12 @@ help:
 	@echo "  doctest    to run all doctests embedded in the documentation (if enabled)"
 
 clean:
-	-rm -rf $(BUILDDIR)/*
-
+	rm -rf $(BUILDDIR)/*
+	rm -rf source/auto_examples/
 html:
-	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html
+	$(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)
 	@echo
-	@echo "Build finished. The HTML pages are in $(BUILDDIR)/html."
+	@echo "Build finished. The HTML pages are in $(BUILDDIR)."
 
 dirhtml:
 	$(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml

diff --git a/doc/source/Auto_tofu.geom.rst b/doc/source/Auto_tofu.geom.rst
diff --git a/doc/source/Auto_tofu.pathfile.rst b/doc/source/Auto_tofu.pathfile.rst
diff --git a/doc/source/Auto_tofu.plugins.AUG.rst b/doc/source/Auto_tofu.plugins.AUG.rst
diff --git a/doc/source/Auto_tofu.plugins.ITER.rst b/doc/source/Auto_tofu.plugins.ITER.rst
diff --git a/doc/source/Auto_tofu.plugins.rst b/doc/source/Auto_tofu.plugins.rst
diff --git a/doc/source/Auto_tofu.treat.rst b/doc/source/Auto_tofu.treat.rst
diff --git a/doc/source/Dependencies.rst b/doc/source/Dependencies.rst
diff --git a/doc/source/Todos.rst b/doc/source/Todos.rst