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e489f2e
[Issue341] _inspect_channels() stared, TBC TBF
Feb 3, 2020
8c25cb0
[Issue341] Advancing _inspect_channels()
Feb 4, 2020
8bc431a
[Issue341] Multi.inspect_channels() implemented, useful for introspec…
Feb 5, 2020
93d3659
[version] new version
lasofivec Feb 5, 2020
3adee50
Merge pull request #342 from ToFuProject/master
Didou09 Feb 5, 2020
bd44f4f
[Issue341] Need to finish testing (ece, reflectometer...)
Feb 5, 2020
5794d86
[Issue #340] deploying only in the right branch
lasofivec Feb 5, 2020
c2eeeaf
right version
lasofivec Feb 5, 2020
5858375
trying to add quotes to condition
lasofivec Feb 5, 2020
ea91376
exporting at the right place
lasofivec Feb 5, 2020
4857388
debugging
lasofivec Feb 5, 2020
25608e5
[Issue341] to_Cam() and to_Data() seem operational for bolometer, int…
Feb 6, 2020
c02e165
[Issue341] magnetics operational
Feb 6, 2020
4e58fc1
trying to only use file version of updateveresion
lasofivec Feb 6, 2020
cba8347
[Issue341] Corrected indch_auto=_INDCH_AUTO in tofuplot and tofucalc
Feb 6, 2020
5ec3c04
[Issue341] PEP8 Compliance
Feb 6, 2020
19d8c97
[Issue341] PEP8 Compliance 2
Feb 6, 2020
4ff73d4
[Issue341] PEP8 Compliance 3
Feb 6, 2020
8b49304
[Issue341] PEP8 Compliance 4
Feb 6, 2020
7b75559
[Issue341] PEP8 Compliance 5
Feb 6, 2020
0d52ecf
[Issue341] PEP8 Compliance 6
Feb 6, 2020
e7ca823
[Issue341] PEP8 Compliance 7
Feb 6, 2020
403ec2b
[Issue341] PEP8 Compliance 8
Feb 6, 2020
c8ce480
Merge branch 'Issue341_indchauto' into Issue344_deploybin
Feb 6, 2020
3fb4c51
[Issue344] moved tofuplot and tofucalc to bin/
Feb 6, 2020
fb24ff9
[Issue344] Renamed /bin -> /scripts
Feb 6, 2020
1e66782
[Issue344] Moved script/ into tofu
Feb 6, 2020
f0d4dfa
[Issue344] tofuplot and tofucalc operational, tested with local setup…
Feb 6, 2020
e88dd10
Merge pull request #343 from ToFuProject/Issue341_indchauto
lasofivec Feb 6, 2020
8ff31b7
Merge pull request #345 from ToFuProject/Issue344_deploybin
lasofivec Feb 6, 2020
91b686e
erased old update version function in setup
lasofivec Feb 6, 2020
de0908a
having a version number different to the tag version number
lasofivec Feb 6, 2020
69b1aa9
adding prints to see whats happening in travis
lasofivec Feb 6, 2020
4c8ff09
only building conda recipe for conda deployment
lasofivec Feb 6, 2020
b1d018f
trying install not in editable mode
lasofivec Feb 6, 2020
9c9c839
instaling requirements
lasofivec Feb 6, 2020
d916732
checking version number right before deployment
lasofivec Feb 6, 2020
e581319
checking version number right before deployment
lasofivec Feb 6, 2020
d254226
reverting back installation method
lasofivec Feb 6, 2020
d16595d
[deploy] cleaning up changes
lasofivec Feb 6, 2020
2af1a09
[deploy] cleaning up changes 2
lasofivec Feb 6, 2020
e4a1177
Merge pull request #348 from ToFuProject/deploy-test
Didou09 Feb 7, 2020
51749d5
[Issue349] Changed shortcuts reflectometer_profile
Feb 7, 2020
a23e1c5
[Issue349] Small improvements to tofuplot and tofucalc to make sure t…
Feb 7, 2020
2b1aa02
[Issue349] Clean-up
Feb 7, 2020
099b760
[Issue349] PEP8 compliance
Feb 7, 2020
dd17eb2
Merge pull request #350 from ToFuProject/Issue349_NewIMASReflectomete…
lasofivec Feb 7, 2020
68e3ec0
[Issue346] from_mat operational, but to be tested
Feb 20, 2020
8a409da
[Issue346] Debugged and tested when possible tofucalc with --input_fi…
Feb 20, 2020
919e2cb
[Issue346] moved _dshort and _didsdiag of Multi to tofu/imas2tofu/_de…
Feb 20, 2020
8ab2519
[Issue346] Added tofu/imas2tofu/_mat2ids2calc.py
Feb 20, 2020
6becc22
[Issue346] Debugged default values of parameters in tofucalc.py
Feb 20, 2020
644741c
[Issue346] PEP8 compliance 1
Feb 20, 2020
4a7f26d
[Issue346] PEP8 compliance 2
Feb 20, 2020
ee6a0f4
[Issue346] PEP8 compliance 3
Feb 20, 2020
cd441ad
[Issue346] PEP8 compliance 4
Feb 20, 2020
6b48154
[Issue351] Comments in tofu/imas2tofu/_def.py
Feb 20, 2020
f62da38
[Issue351] Experimenting with get_shortcuts() class vs instance
Feb 20, 2020
710f0d0
[Issue351] Introduced staticmethod, classmethod and instance method f…
Feb 21, 2020
0b5962b
[Issue351] Added Laura in list of authors in setup.py
Feb 21, 2020
baa2ddb
[Issue351] Added script tofucustom.py for creating local dir and files
Feb 21, 2020
4622b31
[Issue351] Added tofu-custom bash command in setup.py, refering to to…
Feb 21, 2020
f5b4781
[Issue351] PEP8 compliance 1
Feb 21, 2020
abddd2d
Merge pull request #352 from ToFuProject/Issue346_tofucalcMat
lasofivec Feb 21, 2020
8d61f48
Merge pull request #353 from ToFuProject/Issue351_CustomShortcuts
lasofivec Feb 21, 2020
6050c46
[Communications] added strasbourg seminars
lasofivec Feb 24, 2020
1a5ca76
Merge pull request #354 from ToFuProject/StrasSeminar
Didou09 Feb 25, 2020
30d79f4
[Issue347] More explicit error message in tofu.geom._core.py
Feb 25, 2020
03b6311
[Issue356] Created openadas2tofu sub-package with __init__.py
Feb 27, 2020
cb0c53f
[Issue356] updated version
Feb 27, 2020
e4d82cd
[Issue357] Made allow_pickle available to user
Feb 27, 2020
7f7a339
[Issue356] Advanced search()
Feb 27, 2020
f16dd82
[Issue357] Corrected Typo
Feb 27, 2020
90cefa7
[Issue357] PEP8 compliance
Feb 27, 2020
687249c
[Issue356] Web interface operational for search, download, download_a…
Feb 28, 2020
d28fd3d
[Issue356] Started reading routines, ADF15 to be finished and tested
Feb 28, 2020
d30992a
Merge pull request #358 from ToFuProject/Issue357_AllowPickle
lasofivec Mar 2, 2020
4784c5b
Merge pull request #355 from ToFuProject/Issue347_geomtestsfailing
lasofivec Mar 2, 2020
ecbc0a2
Merge branch 'devel' into Issue356_openadas
Mar 3, 2020
bbbef68
[new-doc] Added first version of tofu_from_bash.rst, with tofuplot
Mar 3, 2020
dddc7bf
Merge branch 'devel' into new-doc
Mar 3, 2020
f5484b8
[new-doc] added doc/source/tofu_from_bash.rst
Mar 3, 2020
5a8d273
[Issue359] Default script parameters put in tofu/script/_def.py and t…
Mar 3, 2020
16f6c0b
Merge pull request #360 from ToFuProject/Issue359_ScriptDefaultParame…
lasofivec Mar 3, 2020
3b8dc22
[Issue359] os.chdir() -> sys.path.prepend() to load specific module f…
Mar 3, 2020
c35b1b0
[Issue359] Replaced sys.path method by importlib method (cleaner ?)
Mar 4, 2020
44a9874
[Issue359] Added tofu-custom as ultimate test afetr unit tests in .tr…
Mar 4, 2020
a0f6fc3
[Issue359] Added release notes for 1.4.3
Mar 4, 2020
ee6f48b
[Issue356] Debugged tofucustom for openadas/ creation and debugged im…
Mar 4, 2020
a4c55fe
[Issue356] ADF15 file reading ok with proper keys and checks, now imp…
Mar 4, 2020
b7e9007
[Issue356] search_online(), search_online_by_wavelength() and downloa…
Mar 5, 2020
480d04d
[Issue356] read() operational for both absolute path and full adas na…
Mar 5, 2020
c42e00c
[Issue356] read_all() operational, with element, Type and optional ch…
Mar 5, 2020
39b1824
[Issue356] Debugged search_online() and now operational for adf11
Mar 5, 2020
11e72e0
[Issue356] Replace '+' by '1+' in search_online()
Mar 5, 2020
029850e
[Issue356] Finishing ADF11/SCD reading routine
Mar 5, 2020
f657de5
[Issue356] _read_adf11 operational and read_all() operational for adf…
Mar 6, 2020
76d020d
[Issue356] Harmonized output for adf11 and adf15 in read_all()
Mar 6, 2020
f4208ff
[Issue356] Added docstr to read() and read_all()
Mar 6, 2020
26371bf
[Issue356] Minor typo
Mar 6, 2020
2d4ab61
[Issue356] PEPA compliance
Mar 6, 2020
328d320
[Issue356] PEP8 compliance 2
Mar 6, 2020
0d3af17
Merge branch 'devel' into Issue356_openadas
Didou09 Mar 6, 2020
b9a55dc
[Issue356] Typo in lambmin / lambmax selection in _read_adf15()
Mar 6, 2020
f832ab7
[Issue356] Improve consistency with Issue202 for dlines dict out of _…
Mar 6, 2020
3ee8536
[Issue356] Typo
Mar 6, 2020
3c221cd
Merge pull request #361 from ToFuProject/Issue359_ScriptDefaultParame…
lasofivec Mar 10, 2020
21beb70
Merge branch 'devel' into Issue356_openadas
lasofivec Mar 10, 2020
a7cffef
Merge pull request #362 from ToFuProject/Issue356_openadas
lasofivec Mar 10, 2020
3cec504
[new doc] merged with devel
lasofivec Mar 10, 2020
f047cfc
Merge pull request #363 from ToFuProject/new-doc
Didou09 Mar 10, 2020
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34 changes: 18 additions & 16 deletions .travis.yml
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
language: python
matrix:
jobs:
include:
- name: Bionic python 3.7
os: linux
Expand Down Expand Up @@ -61,9 +61,16 @@ install:
- export VERSION=$(echo $REV | tr - .)
- echo $REV
- pip install -e ".[dev]"
- export IS_MASTER=$(git ls-remote origin | grep "$TRAVIS_COMMIT\s\+refs/heads/master$" | grep -o "master")
- export IS_DEPLOY=$(git ls-remote origin | grep "$TRAVIS_COMMIT\s\+refs/heads/deploy-test$" | grep -o "deploy-test")
- echo $TRAVIS_COMMIT
- echo $IS_MASTER
- echo $IS_DEPLOY

script:
- cd $HOME
- nosetests tofu.tests --nocapture -v --with-id --with-timer --with-coverage --cover-package=tofu
- tofu-custom
after_success:
- codecov
- chmod +x $START/anaconda_upload.sh
Expand All @@ -76,61 +83,56 @@ before_deploy:
echo "BEFORE DEPLOY START........"
ls $START
cd $START
conda config --set anaconda_upload no
conda install anaconda-client conda-build
conda build conda_recipe
export PKG_REAL=$(conda build . --output | tail -1)
echo "BEFORE DEPLOY END.........."
fi
deploy:
- provider: pypi
distributions: sdist
user: __token__
username: __token__
skip_existing: true
skip_cleanup: true
on:
branch: deploy-test
tags: true
condition: $IS_DEPLOY = "deploy-test"
server: https://test.pypi.org/legacy/
password:
secure: 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
- provider: pypi
distributions: bdist_wheel
user: __token__
username: __token__
skip_existing: true
skip_cleanup: true
on:
branch: deploy-test
condition: $OS = osx-64
tags: true
condition: $IS_DEPLOY = "deploy-test"
condition: $OS = osx-64
server: https://test.pypi.org/legacy/
password:
secure: 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
- provider: pypi
distributions: sdist
user: "Didou09"
username: "Didou09"
skip_existing: true
skip_cleanup: true
on:
tags: true
branch: master
condition: $IS_MASTER = "master"
password:
secure: 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
- provider: pypi
distributions: bdist_wheel
user: "Didou09"
username: "Didou09"
skip_existing: true
skip_cleanup: true
on:
condition: $OS = osx-64
tags: true
branch: master
condition: $IS_MASTER = "master"
password:
secure: 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
- provider: script
script: $START/anaconda_upload.sh
skip_cleanup: true
on:
tags: true
branch: master
skip_cleanup: true
condition: $IS_MASTER = "master"
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
@article{didier2016,
title={Non-monotonic growth rates of sawtooth precursors evidenced with a new method on ASDEX Upgrade},
author={Vezinet, D and Igochine, V and Weiland, M and Yu, Q and Gude, A and Meshcheriakov, D and Sertoli, M and EUROfusion MST1 Team and others},
journal={Nuclear Fusion},
volume={56},
number={8},
pages={086001},
year={2016},
publisher={IOP Publishing}
}
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