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Refactor useq
Refactor useq
Added Manta. Added containers for both manta & freec.
tilschaef
reviewed
Jun 25, 2020
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| script: | ||
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| cat /bin/assess_significance.R | R --slave --args ${cnv_file} ${ratio_file} |
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I think /bin is automatically added to your $PATH env so you dont't have to specify it.
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If you cat a file, it doesn't get automatically added.
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Does cat assess_significance.R | R --slave --args ${cnv_file} ${ratio_file} not work?
tilschaef
approved these changes
Jul 6, 2020
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Contains modules for FREEC & Manta, both running in singularity compatible containers.