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Feature/workflow params log#56

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rernst merged 6 commits intodevelopfrom
feature/workflow_params_log
Nov 15, 2021
Merged

Feature/workflow params log#56
rernst merged 6 commits intodevelopfrom
feature/workflow_params_log

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@rernst rernst commented Nov 5, 2021

Process to export all workflow params in a tab delimited file.

Example output:

param	value
dxtracks_path	/hpc/diaggen/software/production/Dx_tracks
fastq_path	/hpc/diaggen/data/upload/RAW_data_MIPS/nextseq_umc02/211013_NB501039_0388_AH3VN5AFX3
fingerprint_target	fingerprint/81SNP_design.vcf
gatk_path	/hpc/local/CentOS7/cog_bioinf/GenomeAnalysisTK-3.8-1-0-gf15c1c3ef/GenomeAnalysisTK.jar
genome	/hpc/diaggen/data/databases/ref_genomes/Homo_sapiens.GRCh37.GATK.illumina/Homo_sapiens.GRCh37.GATK.illumina.fasta
mips_design_file	fingerprint/81_snp_mips_design.txt
mips_trim_dedup_path	/hpc/diaggen/software/production/mips
mips_uuid_length	8
mips_uuid_read	R1
outdir	/hpc/diaggen/projects/nextflow_params_log/211013_NB501039_0388_AH3VN5AFX3

@rernst rernst requested a review from sawibo November 5, 2021 11:21
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Reasonable structure and usage of functions.

@rernst rernst removed the request for review from sawibo November 15, 2021 12:29
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3 participants