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Conn tool alpha rcw #375

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Merged
dankessler merged 2 commits into from
Dec 15, 2015
Merged

Conn tool alpha rcw #375

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5c1be9c
fixed typo in realignment parameters variable when not including moti…
mangstad Jan 12, 2015
c023aba
Fixed small but in Code/SOM_WriteNII.m and merged Joe's fix to the ce…
rcwelsh Oct 30, 2015
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11 changes: 10 additions & 1 deletion ConnTool/Code/SOM_WriteNII.m
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Original file line number Diff line number Diff line change
Expand Up @@ -44,7 +44,16 @@
return
end

if any(volDIM(1:3)-size(niftiIn.dat(:,:,:,1)))
niiDIM = size(niftiIn.dat(:,:,:,1));

% Needed to add this in case the "template" image was also two-dimensional
% Robert Welsh - 2015-10-29

if length(niiDIM) < length(volDIM)
niiDIM = [niiDIM 1];
end

if any(volDIM(1:3)-niiDIM)
SOM_LOG(sprintf('FATAL ERROR : TemplateImage dimension doesn''t match data dimension to be written\n'));
return
end
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2 changes: 1 addition & 1 deletion ConnTool/ConnTool_batch_mc_central.m
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Expand Up @@ -193,7 +193,7 @@
if (MotionDeriv)
RealignmentParametersQuad = [RealignmentParameters RealignmentParametersDerivR].^2;
else
RealignmentParametersQuad = RealignmenParameters.^2;
RealignmentParametersQuad = RealignmentParameters.^2;
end

parameters.data.run(iRun).MotionParameters = [RealignmentParameters];
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