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Updating LOIO visualization #47

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Merged
gwaybio merged 11 commits into from
Feb 6, 2024
Merged

Updating LOIO visualization #47

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efff9d7
update summary notebook of LOIO analysis
gwaybio Oct 30, 2023
f6d7dc3
update LOIO analysis to include all feature spaces
gwaybio Oct 30, 2023
6d9f073
Merge remote-tracking branch 'upstream/main' into update-loio-figure
gwaybio Feb 3, 2024
e7063e3
update LOIO evaluation with no-ic run
gwaybio Feb 3, 2024
2680184
delete legacy LOIO summary files
gwaybio Feb 3, 2024
fdb7bf6
add updated summary rank files after no-ic
gwaybio Feb 3, 2024
80a0e5c
fix comment re. pr review
gwaybio Feb 3, 2024
43e1026
fix colors to show boxplot median
gwaybio Feb 3, 2024
7dd8eb7
update figure 4 with new LOIO analysis and in response to PR comments
gwaybio Feb 3, 2024
702080d
remove panel a, belong in methods
gwaybio Feb 4, 2024
8618141
add clarifying comment about the model we visualize
gwaybio Feb 6, 2024
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431 changes: 252 additions & 179 deletions 3.evaluate_model/LOIO_evaluation.ipynb
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1,978 changes: 0 additions & 1,978 deletions 3.evaluate_model/evaluations/LOIO_probas/LOIO_summary_ranks.tsv
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46 changes: 0 additions & 46 deletions 3.evaluate_model/evaluations/LOIO_probas/LOIO_summary_ranks_perphenotype.tsv
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91 changes: 0 additions & 91 deletions 3.evaluate_model/evaluations/LOIO_probas/LOIO_summary_ranks_perphenotype_withshuffled.tsv
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