Add confusion matrix notebook #8
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* finish download module changes * download notebook * rerun split data module * rerun download module * rerun train_model * rerun evaluation module * rerun interpretation module * combine datasets * combine datasets * split changes * update format * format update * format * finish split data * combine datasets, remove holdout * formatting * rerun pipelines * remove folded class * rerun pipeline * Update utils/download_utils.py Co-authored-by: Dave Bunten <ekgto445@gmail.com> * PR fixes * module docstrings Co-authored-by: Dave Bunten <ekgto445@gmail.com>
d33bs
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Feb 6, 2023
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Nice work! I left a few comments with this review - please don't hesitate to reach out if you have any questions.
gwaybio
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Feb 7, 2023
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| def model_cm( |
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can you rename this model_confusion_matrix() it is clearer than cm
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This PR is the first of many to restructure the evaluate model module and output the evaluations in tidy long format for later figure generation.
In this PR, a separate notebook is created to display the confusion matrices for the final and shuffled baseline models' predictions for the train and test datasets. These confusion matrices are converted to tidy long format and saved in confusion matrices.