seq_deposit

a set of commands for ensuring that all sequences ordered are properly organized and documented for the Yesselman Lab.

Install

To install seq_deposit

python -m pip install git+https://github.com/jyesselm/seq_deposit

How to use

The python package generates a new executable called seq-deposit ensure that is exists in your path.

$ seq-deposit --help
Usage: seq-deposit [OPTIONS] COMMAND [ARGS]...

  command line interface for seq_deposit script

Options:
  --help  Show this message and exit.

Commands:
  assembly          generate required files for primer assemblies
  opools            generate required files for opools
  set-deposit-path  update deposit path

set-deposit-path

The first step is to set the deposit path. This is the path to the directory where all the sequencing data is stored. Make sure you have

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