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Bankn8II©$A edited this page May 21, 2025 · 3 revisions

Welcome to the SmartPhosExplorer wiki!

https://aibolem.github.io/SmartPhosExplorer/vignette/vignette.html

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Heatmap

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Output

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https://aibolem.github.io/SmartPhosExplorer/NEWS.html

SmartPhosExplorer update notes Version: 1.0.5 Date: 2024-07-01

CHANGES IN VERSION 1.0.5

Preprocessing:

Add an option to normalize phospho intensity by the corresponding protein expression. Add MinDet imputation method. Differential expression analysis:

Add option to allow users to choose which metadata column should be used for hypothesis testing. Time series clustering:

Add option to allow users to choose which metadata column should be used for clustering. Enrichment analysis:

Add another option to perform enrichment analysis on all the time-series clusters and generate an interactive dot plot. Clicking on the points will give a list of genes associated with that pathway and the cluster. User can upload a Gene Set file (.gmt) and a PTM set file (.txt file) instead of selecting from the available selections.

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