Skip to content

Conversation

@damccorm
Copy link
Contributor

@damccorm damccorm commented Aug 27, 2025

Merging into my personal branch for testing


Thank you for your contribution! Follow this checklist to help us incorporate your contribution quickly and easily:

  • Mention the appropriate issue in your description (for example: addresses #123), if applicable. This will automatically add a link to the pull request in the issue. If you would like the issue to automatically close on merging the pull request, comment fixes #<ISSUE NUMBER> instead.
  • Update CHANGES.md with noteworthy changes.
  • If this contribution is large, please file an Apache Individual Contributor License Agreement.

See the Contributor Guide for more tips on how to make review process smoother.

To check the build health, please visit https://github.com/apache/beam/blob/master/.test-infra/BUILD_STATUS.md

GitHub Actions Tests Status (on master branch)

Build python source distribution and wheels
Python tests
Java tests
Go tests

See CI.md for more information about GitHub Actions CI or the workflows README to see a list of phrases to trigger workflows.

mohamedawnallah and others added 30 commits August 20, 2025 09:41
…pache#35906)

Bumps [github.com/docker/go-connections](https://github.com/docker/go-connections) from 0.5.0 to 0.6.0.
- [Commits](docker/go-connections@v0.5.0...v0.6.0)

---
updated-dependencies:
- dependency-name: github.com/docker/go-connections
  dependency-version: 0.6.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
)

* implement lambda name pickling in cloudpickle

* add enable_lambda_name to __init__

* fix formatting and lint

* fix typo

* fix code paths in test

* fix tests

* fix lint

* fix formatting and failing test

* fix formatting again

* remove cloudpickle implementation to leave only typo fixes and fixing test structure.

* fix _make_function typo

* revert regex

* fix failing tests

* fix formatting

* update prefix to not hardcode
…5946)

* feat(mongodb): upgrade MongoDB Java driver to version 5.5.0

Update MongoDB Java driver from 3.12.11 to 5.5.0 and refactor code to use new API
Add mongo-bson dependency required by new driver version
Replace deprecated MongoClient with MongoClients and update GridFS implementation

* refactor(mongodb): update MongoDB client usage to modern API

Replace deprecated MongoClient with MongoClients.create() and update database drop method

* build(dependencies): add mongodb driver core dependency

Add mongodb-driver-core to support MongoDB Java driver functionality.
Also mark mongo_java_driver as permitUnusedDeclared and add testImplementation.

* fix(mongodb): update embedded mongo version and fix split key filtering

Update embedded MongoDB test dependency to version 3.5.4 and simplify split key filtering logic by using BsonObjectId for range queries. This ensures proper type handling when filtering MongoDB documents by _id field.

* build: add mongodb-driver-core dependency

Add mongodb-driver-core version 5.5.0 to support MongoDB Java driver functionality

* use version

* refactor: simplify mongo client creation logic

Remove redundant null check and consolidate uri handling in MongoDbGridFSIO
Bumps [github.com/aws/aws-sdk-go-v2/credentials](https://github.com/aws/aws-sdk-go-v2) from 1.18.6 to 1.18.7.
- [Release notes](https://github.com/aws/aws-sdk-go-v2/releases)
- [Changelog](https://github.com/aws/aws-sdk-go-v2/blob/config/v1.18.7/CHANGELOG.md)
- [Commits](aws/aws-sdk-go-v2@config/v1.18.6...config/v1.18.7)

---
updated-dependencies:
- dependency-name: github.com/aws/aws-sdk-go-v2/credentials
  dependency-version: 1.18.7
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
)

Bumps [google.golang.org/grpc](https://github.com/grpc/grpc-go) from 1.74.2 to 1.75.0.
- [Release notes](https://github.com/grpc/grpc-go/releases)
- [Commits](grpc/grpc-go@v1.74.2...v1.75.0)

---
updated-dependencies:
- dependency-name: google.golang.org/grpc
  dependency-version: 1.75.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…che#35948)

* fix(parquetio): handle missing nullable fields in row conversion

Add null value handling when converting rows to Arrow tables for nullable fields that are missing from input data. This fixes KeyError when writing to Parquet with missing nullable fields, addressing issue apache#35791.

* fix lint
…he#35980)

Bumps [cloud.google.com/go/storage](https://github.com/googleapis/google-cloud-go) from 1.56.0 to 1.56.1.
- [Release notes](https://github.com/googleapis/google-cloud-go/releases)
- [Changelog](https://github.com/googleapis/google-cloud-go/blob/main/CHANGES.md)
- [Commits](googleapis/google-cloud-go@spanner/v1.56.0...storage/v1.56.1)

---
updated-dependencies:
- dependency-name: cloud.google.com/go/storage
  dependency-version: 1.56.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Fix segv when docker container is self-terminated

* Add some debug logging for docker and process env.
* add a jinja include pipeline example

* update yaml doc with import example

* address gemini and other comments

* fix table of contents for readme

* add link to jinja pipeline examples
* Add the base log_analyzer

* Add github action for security logging

* Enhance LogAnalyzer to filter logs by time range and include file names in event summary

* Add dry-run option for weekly email report generation in LogAnalyzer

* Better error handling for timezones and missing details

* Refactor LogAnalyzer to use SinkCls for type consistency and enhance bucket permission management for log sinks
* add import jinja pipeline example

* revert name change

* update overall examples readme

* fix lint issue

* fix gemini small issue

* Update sdks/python/apache_beam/yaml/examples/transforms/jinja/import/README.md

---------

Co-authored-by: tvalentyn <tvalentyn@users.noreply.github.com>
@damccorm damccorm merged commit c082ab9 into apache:users/damccorm/repro-35920 Aug 27, 2025
93 of 103 checks passed
Copy link
Contributor

@gemini-code-assist gemini-code-assist bot left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Summary of Changes

Hello @damccorm, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request introduces a new GCP Security Analyzer tool, updates various dependencies across Go, Java, and Python SDKs, and includes several bug fixes and improvements. Key changes involve upgrading MongoDB drivers, enhancing Parquet I/O for nullable fields, refining Go SDK worker environment handling, and expanding Jinja templating capabilities in Beam YAML.

Highlights

  • New GCP Security Analyzer: A new GCP Security Analyzer tool has been added, designed to monitor critical security events within a Google Cloud environment. It uses log sinks to capture specific events (e.g., IAM policy changes, service account key creation) and generates weekly email reports based on analyzed logs. The tool is configured via a dedicated YAML file and includes a Python script for its core logic.
  • MongoDB Driver Upgrade and API Migration (Java SDK): The Java SDK has undergone a significant upgrade of its MongoDB dependencies, migrating to version 5.5.0 of the MongoDB Java driver. This involved updating various modules (SQL extensions, MongoDB I/O) and refactoring code to utilize the newer, more modern API for MongoDB and GridFS operations, replacing deprecated classes and methods.
  • Go SDK Worker Environment Enhancements: Improvements have been made to the Go SDK's worker environment handling, particularly for Docker containers running on non-Linux operating systems (like Mac or Windows). The system now intelligently resolves 'localhost' endpoints to 'host.docker.internal' to ensure proper communication within the Docker network, enhancing reliability for local development and testing setups.
  • Parquet I/O Nullable Field Fix (Python SDK): A bug has been fixed in the Python SDK's Parquet I/O connector where writing data with missing nullable fields would result in a KeyError. The system now correctly handles these scenarios by inserting None for any absent nullable fields, ensuring data integrity and preventing pipeline failures.
  • Enhanced Jinja Templating in Beam YAML: The Beam YAML framework now supports the Jinja % import directive, allowing users to define reusable macros in separate YAML files and import them into their main pipeline definitions. This significantly enhances modularity, reusability, and organization of complex YAML-based pipelines.
  • Comprehensive Dependency Updates: Numerous dependencies across the Go, Java, and Python SDKs have been updated to their latest versions. This includes various Google Cloud libraries, AWS SDK components, Docker client libraries, OpenTelemetry, gRPC, and specific Python packages like pymilvus, pymongo, and requests, ensuring compatibility and leveraging the latest features and security patches.
Using Gemini Code Assist

The full guide for Gemini Code Assist can be found on our documentation page, here are some quick tips.

Invoking Gemini

You can request assistance from Gemini at any point in your pull request via creating an issue comment (i.e. comment on the pull request page) using either /gemini <command> or @gemini-code-assist <command>. Below is a summary of the supported commands.

Feature Command Description
Code Review /gemini review Performs a code review for the current pull request in its current state.
Pull Request Summary /gemini summary Provides a summary of the current pull request in its current state.
Comment @gemini-code-assist Responds in comments when explicitly tagged, both in issue comments and review comments.
Help /gemini help Displays a list of available commands.

Customization

To customize Gemini Code Assist for GitHub experience, repository maintainers can create a configuration file and/or provide a custom code review style guide (such as PEP-8 for Python) by creating and adding files to a .gemini/ folder in the base of the repository. Detailed instructions can be found here.

Limitations & Feedback

Gemini Code Assist may make mistakes. Please leave feedback on any instances where its feedback is incorrect or counter productive. You can react with 👍 and 👎 on @gemini-code-assist comments. If you're interested in giving your feedback about your experience with Gemini Code Assist for Github and other Google products, sign up here.

You can also get AI-powered code generation, chat, as well as code reviews directly in the IDE at no cost with the Gemini Code Assist IDE Extension.

Footnotes

  1. Review the Privacy Notices, Generative AI Prohibited Use Policy, Terms of Service, and learn how to configure Gemini Code Assist in GitHub here. Gemini can make mistakes, so double check it and use code with caution.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Projects

None yet

Development

Successfully merging this pull request may close these issues.

10 participants