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scMatch for python 3

Status: Open.

#17 In asrhou/scMatch;

· nebetbastet opened on Feb 20, 2025

Is it possible to use external reference datasets in the form of labeled seurat/sce/anndata objects?

Status: Open.

#16 In asrhou/scMatch;

· andrewdchen opened on Nov 30, 2023

Annotating test data failed

Status: Open.

#15 In asrhou/scMatch;

· imalsoft9 opened on Mar 11, 2023

Deprecated function .ix (pandas) replaced by .iloc

Status: Open.

#14 In asrhou/scMatch;

· zeryas opened on Jun 2, 2022

How do I use it on Windows

Status: Open.

#12 In asrhou/scMatch;

· zznx opened on Jan 22, 2021

Reference dataset

Status: Open.

#9 In asrhou/scMatch;

· HypoChloremic opened on Feb 13, 2020

Run with custom reference set

Status: Open.

#6 In asrhou/scMatch;

· mbernste opened on Sep 5, 2019

Issue when running Toterm.py

Status: Open.

#5 In asrhou/scMatch;

· ghost opened on Aug 27, 2019

Duplicate ontology terms

Status: Open.

#4 In asrhou/scMatch;

· Jon-bioinfo opened on Aug 19, 2019