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athenamarou/README.md

Hi there, I'm Athena!

I am a Bioinformatics Master's Student with interest for bridging the gap between Biology and Computer Science. I like exploring how programming can solve complex biological problems.

🧬 About Me

  • I graduated from the Department of Biotechnology of the Agricultural University of Athens.
  • 🎓 Currently doing my Master's in Bioinformatics.
  • 💻 I enjoy coding.

🛠 Tech Stack

  • Languages: Python (Primary), R, Bash, SQL.
  • Mools & Libraries: Biopython, Pandas, NumPy, Matplotlib, Scipy, Scikit-learn, etc..

🎓 Master's Degree Projects

As part of my MSc in Bioinformatics at the University of Crete, I completed a series of coursework projects for the 'Programming with Python' course, focusing on computational analysis and algorithmic implementation:

  • Drug-Interaction-ML-Classifier (Project 1)
  • Genomic-Disease-Association-FisherTest (Project 2)
  • Mondo-Ontology-Hierarchy-Parser (Project 3)
  • Metagenomic-Kmer-Diversity-Analysis (Project 4)
  • Cancer-Systems-Biology-Boolean-Networks (Project 5)
  • Polypharmacy-Side-Effect-Network (Project 6)
  • DNA-Tokenization-BPE-Algorithm (Project 7)

📫 How to reach me:

Popular repositories Loading

  1. athenamarou athenamarou Public template

  2. Drug-Interaction-ML-Classifier Drug-Interaction-ML-Classifier Public

    Predicting Drug-Drug Interactions (DDI) using Machine Learning and molecular features (Morgan/RDKit)

    Python

  3. Genomic-Disease-Association-FisherTest Genomic-Disease-Association-FisherTest Public

    Statistical analysis of gene-disease associations using Fisher's Exact Test and Mondo Disease Ontology.

    Python

  4. Mondo-Ontology-Hierarchy-Parser Mondo-Ontology-Hierarchy-Parser Public

    A Python-based parser for navigating the Mondo Disease Ontology graph, mapping diseases to specific hierarchical categories using recursive traversal.

    Python

  5. Metagenomic-Kmer-Diversity-Analysis Metagenomic-Kmer-Diversity-Analysis Public

    Quantitative comparison of environmental DNA samples using K-mer frequency profiles, Jaccard similarity, and MDS visualization.

    Python

  6. Ref_Proteomes_Local_DB Ref_Proteomes_Local_DB Public

    A toolkit for downloading, parsing, and querying UniProt Reference Proteomes into a versioned local MySQL database. Designed for bioinformatics labs running self-hosted infrastructure

    Python