AtlasWebService

A web service for automating metadata collection and bioinformatics analysis

ATX-CLI

Login and get token

Login can generate the api token

$ atx-tools login 
$ export ATX_TOKEN=<token>
$ atx-tools whoami

Explicit way of supplying token in command line

$ atx-tools -a <token> COMMAND 

Requirements

• = python3.6

• flask
• flask_jwt_extended
• flask_cors
• boto3
• pyyaml
• warrant
• pymongo
• opencv-python
• scanpy
• numpy

Database & other services

• MongoDB
• RabbitMQ (for celery workers)
• Redis (for celery workers)

Changelogs

2021-11-15

• [POST] /api/v1/task
• [GET] /api/v1/task/<task_id>
• [GET] /api/v1/storage/image_as_jpg