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Python CLI to convert between zero and one based genomic coordinate systems

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convert_zero_one_based

Python CLI to convert between zero and one based coordinate systems

Install Anaconda

  1. You can find an installer to Anaconda here for your distribution (macOS, Linux, windows).
  2. Download the installer and follow the instructions.

Install convert_zero_one_based

  1. Clone this repo

     git clone https://github.com/griffithlab/convert_zero_one_based.git
    
  2. Add conda-forge channel to build dependencies

     conda config --add channels conda-forge 
    
  3. Use Anaconda to build the tool

     cd convert_zero_one_based
     conda build meta.yaml
    
  4. Install the tool locally

     conda install convert_zero_one_based --use-local
    
  5. Verify the install

     convert_zero_one_based --help
    

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Python CLI to convert between zero and one based genomic coordinate systems

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  • Python 100.0%