Skip to content

fix omega_globalloc #207

@FerriolCalvet

Description

@FerriolCalvet

Add the latest omega updates to ensure that the distribution of the number of synonymous mutations per gene in each sample is distributed taking into account the global synonymous mutation rates of the gene, the sequencing depths of each gene but also the difference between the mutational profile of the sample and the full cohort where the mutation rates have been computed.

Development

  • update omega container in dockerhub
  • update omega container used in the omega modules
  • update omega preprocessing inputs

Testing

  • test that the outputs make sense, so that the way mutations are redistributed within a sample agrees more or less well with the numbers that we observe

Metadata

Metadata

Assignees

Labels

No labels
No labels

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions