ADD proportion of mutated genomes from VAF#105
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FerriolCalvet merged 3 commits intomainfrom Jun 19, 2024
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- *WARNING* not tested - add new subworkflow for the mutated epithelium from VAF - rename older mutated epithelium as mut epi reads
- Add param to nextflow_schema.json - Add proper upstream filtering of mutations and remove it from python script - Update mutated_epithelium paths - Update mutated_epithelium_vaf subworkflow - Update other configs as required
FerriolCalvet
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We are missing the name change to mutated genomes but we can leave that for later
FerriolCalvet
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