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Add option to restrict all analysis to custom BED file#130

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FerriolCalvet merged 5 commits intodevfrom
custom-bed
Jul 31, 2024
Merged

Add option to restrict all analysis to custom BED file#130
FerriolCalvet merged 5 commits intodevfrom
custom-bed

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@FerriolCalvet FerriolCalvet commented Jul 31, 2024

  • Restrict to custom BED file
  • Restrict to regions with minimum mean depth across samples

- user can provide a custom BED file to compute depths
- focusing the depths on a region restricts everything
- add a new parameter to nextflow config
- update the module script accordingly
@FerriolCalvet FerriolCalvet self-assigned this Jul 31, 2024
@FerriolCalvet FerriolCalvet merged commit 494b517 into dev Jul 31, 2024
@FerriolCalvet FerriolCalvet deleted the custom-bed branch July 31, 2024 10:06
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