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Automatically parse PMEAN and PSTD if available#349

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FerriolCalvet merged 5 commits intodevfrom
parse-pmean
Aug 28, 2025
Merged

Automatically parse PMEAN and PSTD if available#349
FerriolCalvet merged 5 commits intodevfrom
parse-pmean

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@FerriolCalvet FerriolCalvet commented Aug 28, 2025

If available in the input VCF, deepCSA parses for each mutation the mean position in the read and the standard deviation of this position. If not available, columns PMEAN and PSTD are set to -1.

Closes #305

@FerriolCalvet FerriolCalvet self-assigned this Aug 28, 2025
@FerriolCalvet FerriolCalvet added this to the Development phase 1 milestone Aug 28, 2025
@FerriolCalvet FerriolCalvet linked an issue Aug 28, 2025 that may be closed by this pull request
@FerriolCalvet FerriolCalvet merged commit 0a2e599 into dev Aug 28, 2025
@FerriolCalvet FerriolCalvet deleted the parse-pmean branch August 28, 2025 08:46
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Handle PMEAN and pSTD information for each mutation

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