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features: - Update in file naming, including type of panel and sites information. - Update in meta.ids every panel is named either by the sample name or by the type of sites.
Features: - It is always computed providing a mutation rate per all genes and a mutation rate per gene, if you want more samples, these needs to be rerun multiple times. - Integrate information of the regions used in the mutation rate output table. - Modify prefix in protein affecting subworkflows - Add multiple mutation rate processes to main workflow
Features: - Comment unnecessary code in mutabilities computation. - Add assembly parameter to annotation postprocessing scripts. - Add assembly also in initial panel generation script. - Modify module.nf files accordingly. - Minor addition to gitignore Missing: - Test with mice assembly - Add assembly as a main parameter or adapt it from VEP genome.
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