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- Add nf and py files for the mutation plotting module
- mutation rate computed for all, SNV only, all non SNV variants
- subworkflow plot depths - modify output of annotate depths to provide the full table matrix
- add local config file
- working for several plots, but not all - commented code corresponds to missing plots - also additional functions were copied from plot_maf, to be removed
- it works for small panels, but not for the whole pancancer yet
- modify plot_maf.py script to plot at most 30 genes per page when doing it with specific filters or colors
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5 tasks
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This is a first version of some modules to automatically plot summaries of the mutations and depths.