Releases: beast-dev/beast-mcmc
BEAST X v10.5.0
Open-source and cross-platform BEAST software combines molecular phylogenetic reconstruction with complex trait evolution, divergence-time dating and coalescent demographics in an efficient statistical inference engine.
BEAST X (v10.5.0) significantly advances the flexibility and scalability of evolutionary models supported. Novel clock and substitution models leverage: a large variety of evolutionary processes; discrete, continuous and mixed traits with missingness and measurement errors; and fast, gradient-informed integration techniques that rapidly traverse high-dimensional parameter spaces.
See http://beast.community/ for more details.
BEAST.X.v10.5.0.dmg – Mac OS X version
BEAST.X.v10.5.0.zip – Windows version
BEAST_X_v10.5.0.tgz – Linux/UNIX version
BEAST X v10.5.0-beta5
This is the 5th beta of BEAST X v10.5.0.
Beta releases may have bugs. If you find any please do submit an issue here. We suggest results from beta releases are used with a degree of caution.
BEAST X v10.5.0-beta4
This is the 4th beta of BEAST X v10.5.0.
Beta releases may have bugs. If you find any please do submit an issue here. We suggest results from beta releases are used with a degree of caution.
BEAST X v10.5.0-beta3
BEAST X
TODO
BEAST X v10.5.0-beta2
BEAST X
TODO
SARS-CoV-2-origins
BEAST software release for Pekar et al. (2022).
BEAST v1.10.5 pre-release of ThorneyTreeLikelihood v0.1.2
This release includes a few patches that have been made in the main branch since the last release, and makes the thorneytreelikelihood xml api more intuitive. Branch length likelihoods now take a branch rate model only.
Preview of PersistenceSummarizer
v1.10.5pre_persistence_summarizer_v0.1 bug fix for GSS when using GTR
BEAST v1.10.4
BEAST v1.10.4 fixes a bug when trying specify a burnin on the command line version of LogCombiner. It also introduces two new command line options specific to BEAGLE v3.1 (-beagle_threading_off and -beagle_thread_count).
BEAST v1.10 is a major new version with many new features focusing on flexibility of model specification, integration of different data sources, and increasing the speed and efficiency of sampling.
The new version coincides with the publication of a paper describing many of the new features:
Suchard MA, Lemey P, Baele G, Ayres DL, Drummond AJ & Rambaut A (2018) Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 Virus Evolution 4, vey016. DOI:10.1093/ve/vey016
BEAST v1.10.3
BEAST v1.10.3 fixes an important bug where performance was degraded when using BEAGLE 3 on CPUs (compared with using BEAGLE 2 or using GPUs).
BEAST v1.10 is a major new version with many new features focusing on flexibility of model specification, integration of different data sources, and increasing the speed and efficiency of sampling.
The new version coincides with the publication of a paper describing many of the new features:
Suchard MA, Lemey P, Baele G, Ayres DL, Drummond AJ & Rambaut A (2018) Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10 Virus Evolution 4, vey016. DOI:10.1093/ve/vey016