Enable people to install this package via pip

[shreddd]

No description provided.

[eecavanna]

FYI, regarding testing package installation before merge:

People can use pip to install this package from this branch by running:

$ pip install git+https://github.com/ber-data/bertron-schema.git@pip_install-able

Collecting git+https://github.com/ber-data/bertron-schema.git@pip_install-able
  Cloning https://github.com/ber-data/bertron-schema.git (to revision pip_install-able) to /private/var/folders/4h/xtpf5p4156z0pzs7nsv76k1w0000gp/T/pip-req-build-7ned4577
  Running command git clone --filter=blob:none --quiet https://github.com/ber-data/bertron-schema.git /private/var/folders/4h/xtpf5p4156z0pzs7nsv76k1w0000gp/T/pip-req-build-7ned4577
  Running command git checkout -b pip_install-able --track origin/pip_install-able
  Switched to a new branch 'pip_install-able'
  branch 'pip_install-able' set up to track 'origin/pip_install-able'.
  Resolved https://github.com/ber-data/bertron-schema.git to commit 4fc0a5b78fc3653a4342ed52dfb9280533f8abba
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Collecting linkml>=1.9.2 (from bertron-schema==0.1.0)
(...)
Downloading types_python_dateutil-2.9.0.20250516-py3-none-any.whl (14 kB)
Building wheels for collected packages: bertron-schema
  Building wheel for bertron-schema (pyproject.toml) ... done
  Created wheel for bertron-schema: filename=bertron_schema-0.1.0-py3-none-any.whl size=8664 sha256=5e7f2da93b9f16ab498b920f5d442707c5fabf2354b8a40beed6e131ca76dbc8
  Stored in directory: /private/var/folders/4h/xtpf5p4156z0pzs7nsv76k1w0000gp/T/pip-ephem-wheel-cache-zztdyovv/wheels/a8/a2/87/355a6f96f78a31bc8941413697cdabd7fc01ffc0f53306885e
Successfully built bertron-schema
Installing collected packages: sortedcontainers, (...), linkml, bertron-schema
Successfully installed MarkupSafe-3.0.2 (...) bertron-schema-0.1.0 (...)

Note: I replaced some unrelated output with (...).

[eecavanna]

Hi @shreddd, I'll go ahead and merge this in now, as (a) I have reviewed it, (b) it is plumbing-specific and does not affect how anything is modeled, and (c) it not being merged is blocking full completion of ber-data/bertron#56.

[eecavanna]

After merging this branch into main, I confirmed I could install the package via:

pip install git+https://github.com/ber-data/bertron-schema.git

I confirmed it's installed.

$ pip show bertron-schema
Name: bertron-schema
Version: 0.1.0
Summary: LinkML schema for BER data integration work
Home-page:
Author:
Author-email:
License:
Location: /private/tmp/venv1/lib/python3.12/site-packages
Requires: linkml, linkml-runtime, mkdocs-material, mkdocs-mermaid2-plugin
Required-by:

I haven't tried importing its contents in a Python context yet, though.

I have not been able to import a bertron_schema package in Python, though. I don't know whether that's the correct package name.

$ which python
/private/tmp/venv1/bin/python

$ python -i

Python 3.12.9 | packaged by conda-forge | (main, Mar  4 2025, 22:44:42) [Clang 18.1.8 ] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import bertron_schema
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ModuleNotFoundError: No module named 'bertron_schema'
>>>

Update: I filed a new ticket about this, here: #42

---

Update: The fix is to import it this way: import schema.datamodel.bertron_schema_pydantic