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…ment - Added `batch_installer.py` to handle batch operations with features like parallel downloads, dependency optimization, progress tracking, and error handling. - Updated `cli.py` to support batch installation for multiple packages. - Introduced unit tests for the batch installer functionality in `test_batch_installer.py` to ensure reliability and correctness.
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Important Review skippedDraft detected. Please check the settings in the CodeRabbit UI or the You can disable this status message by setting the 📝 WalkthroughWalkthroughAdds a new parallel, dependency-aware batch installation system ( Changes
Sequence Diagram(s)sequenceDiagram
participant CLI as CLI
participant BI as BatchInstaller
participant DR as DependencyResolver
participant IC as InstallationCoordinator
participant SUB as Subprocess
CLI->>BI: install_batch(package_names, execute?, dry_run?)
par Parallel analysis
BI->>DR: resolve dependencies for each package
DR-->>BI: dependency_graph or error
end
BI->>BI: optimize_dependency_graph(all_graphs) -> optimized_commands, shared_deps
BI->>IC: submit install tasks (shared deps first, per-package commands)
alt dry_run
IC-->>BI: planned_commands (no execution)
else execute
par Parallel installs
IC->>SUB: run commands for package(s)
SUB-->>IC: per-package result (success/failure)
IC-->>BI: per-package results
end
alt failures & rollback enabled
BI->>SUB: run rollback_commands in reverse order
SUB-->>BI: rollback results
end
end
BI-->>CLI: BatchInstallationResult (packages, totals, time_saved)
Estimated code review effort🎯 4 (Complex) | ⏱️ ~45 minutes Possibly related PRs
Suggested reviewers
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Actionable comments posted: 2
🧹 Nitpick comments (4)
tests/test_batch_installer.py (2)
11-11: Consider removing sys.path manipulation.The
sys.path.insert(0, ...)pattern is fragile and can cause import resolution issues. Use proper package installation (e.g.,pip install -e .) or configure test discovery to handle the project structure instead.🔎 Recommended approach
Remove the sys.path manipulation and ensure tests are run from the project root with proper package structure:
-sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..")) - from cortex.batch_installer import (Then run tests using:
python -m pytest tests/ # or python -m unittest discover
50-74: Verify status for all analyzed packages.The test only checks
packages["nginx"].statusbut should verify both "nginx" and "docker" were analyzed correctly. Additionally, consider usingside_effectto return different graphs for different packages to better simulate real behavior.🔎 Enhanced test coverage
self.assertEqual(len(packages), 2) self.assertIn("nginx", packages) self.assertIn("docker", packages) self.assertEqual(packages["nginx"].status, PackageStatus.RESOLVING) +self.assertEqual(packages["docker"].status, PackageStatus.RESOLVING)cortex/batch_installer.py (2)
186-195: Consider batch installation resilience for shared dependencies.The current approach installs all shared dependencies in a single command. If this command fails, all packages depending on those shared deps will also fail. Consider breaking shared dependencies into smaller groups or adding retry logic to improve resilience for partial failures.
224-254: Topological sort may not handle complex dependency chains.The current implementation assumes all dependencies can be installed before all packages and doesn't consider ordering among dependencies themselves. If dependency A requires dependency B, this simple algorithm won't detect that ordering requirement. However, since
DependencyResolver.installation_orderalready provides proper ordering per package, this may be acceptable for the current use case.Consider whether the
_topological_sortmethod is actually needed, or if the existinginstallation_orderfromDependencyGraphshould be used directly instead.
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**/*.py
📄 CodeRabbit inference engine (AGENTS.md)
**/*.py: Follow PEP 8 style guide
Type hints required in Python code
Docstrings required for all public APIs
Files:
cortex/cli.pytests/test_batch_installer.pycortex/batch_installer.py
tests/**/*.py
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Maintain >80% test coverage for pull requests
Files:
tests/test_batch_installer.py
**/*install*.py
📄 CodeRabbit inference engine (AGENTS.md)
**/*install*.py: Dry-run by default for all installations in command execution
No silent sudo execution - require explicit user confirmation
Implement audit logging to ~/.cortex/history.db for all package operations
Files:
tests/test_batch_installer.pycortex/batch_installer.py
🧠 Learnings (2)
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
Applied to files:
cortex/cli.pycortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Dry-run by default for all installations in command execution
Applied to files:
cortex/cli.py
🧬 Code graph analysis (3)
cortex/cli.py (2)
cortex/batch_installer.py (4)
PackageStatus(26-35)duration(51-55)install_batch(256-345)success_rate(71-76)cortex/installation_history.py (5)
InstallationHistory(71-631)record_installation(250-309)InstallationType(24-31)update_installation(311-362)InstallationStatus(34-40)
tests/test_batch_installer.py (2)
cortex/batch_installer.py (9)
BatchInstallationResult(59-76)PackageInstallation(39-55)PackageStatus(26-35)duration(51-55)analyze_packages(101-138)_topological_sort(224-254)optimize_dependency_graph(140-222)install_batch(256-345)rollback_batch(455-486)cortex/dependency_resolver.py (4)
DependencyGraph(29-36)Dependency(18-25)resolve_dependencies(202-260)is_package_installed(95-97)
cortex/batch_installer.py (3)
cortex/dependency_resolver.py (4)
DependencyResolver(39-377)DependencyGraph(29-36)resolve_dependencies(202-260)is_package_installed(95-97)cortex/coordinator.py (2)
InstallationCoordinator(65-338)StepStatus(31-36)cortex/cli.py (1)
status(623-654)
🔇 Additional comments (14)
tests/test_batch_installer.py (5)
22-41: LGTM!The tests for
PackageInstallationdataclass comprehensively cover initialization and duration computation with proper edge case handling (None timestamps).
75-147: LGTM!Topological sort test properly verifies ordering constraints, and the dependency graph optimization test correctly validates shared dependency detection and command generation.
148-206: LGTM!Tests effectively cover both dry-run and execute modes, verifying the expected status transitions and result structures.
228-283: LGTM!Tests properly cover rollback functionality in both enabled and disabled states, verifying the expected behavior and subprocess invocation.
285-348: LGTM!Excellent integration test that properly validates multi-package scenarios with shared dependency detection and optimization. The use of
side_effectfor different package responses is particularly well done.cortex/cli.py (5)
751-752: LGTM!Argument parsing correctly updated to support multiple packages with
nargs="+", and the help text clearly indicates multi-package support. The string joining logic appropriately maintains compatibility with the existinginstall()method signature.Also applies to: 817-819
694-697: LGTM!Help text updates accurately reflect the new multi-package installation capability and notification management features.
329-442: Missing sudo confirmation before execution.The batch installation path executes sudo commands without explicit user confirmation, violating the coding guideline "No silent sudo execution - require explicit user confirmation." Consider adding a confirmation prompt before executing commands that require sudo privileges, similar to prompting before destructive operations.
Based on learnings, no silent sudo execution - require explicit user confirmation.
🔎 Suggested implementation
Before executing batch installation, add a confirmation step:
def _install_batch( self, package_names: list[str], execute: bool = False, dry_run: bool = False ) -> int: """...""" self._print_status("🧠", f"Analyzing {len(package_names)} packages...") # ... analysis logic ... # If executing, prompt for confirmation if execute and not dry_run: print("\n⚠️ The following commands will be executed with sudo privileges:") # Show sample commands confirmation = input("Continue? (y/n): ") if confirmation.lower() != 'y': print("Operation cancelled") return 0 # ... rest of execution ...⛔ Skipped due to learnings
Learnt from: CR Repo: cortexlinux/cortex PR: 0 File: AGENTS.md:0-0 Timestamp: 2025-12-11T12:03:24.071Z Learning: Applies to **/*install*.py : No silent sudo execution - require explicit user confirmationLearnt from: CR Repo: cortexlinux/cortex PR: 0 File: AGENTS.md:0-0 Timestamp: 2025-12-11T12:03:24.071Z Learning: Applies to **/*install*.py : Dry-run by default for all installations in command execution
405-432: Audit logging is fully implemented and comprehensive. The code collects all commands from each package in the batch and records them along with package names, operation type, status, and before/after snapshots to~/.cortex/history.db. Each individual package's operations are captured and traceable within the single installation record.
184-193: Default install behavior should use dry-run mode.According to the coding guideline, installations should default to dry-run mode. Currently, the
install()method (lines 184-193) and_install_batch()method default toexecute=False, dry_run=False, resulting in a neutral state where commands are shown but neither executed nor marked as dry-run. To comply with the guideline, change the default todry_run=Trueso installations perform a dry-run by default, requiring explicit--executeflag to actually run commands.⛔ Skipped due to learnings
Learnt from: CR Repo: cortexlinux/cortex PR: 0 File: AGENTS.md:0-0 Timestamp: 2025-12-11T12:03:24.071Z Learning: Applies to **/*install*.py : Dry-run by default for all installations in command executionLearnt from: CR Repo: cortexlinux/cortex PR: 0 File: AGENTS.md:0-0 Timestamp: 2025-12-11T12:03:24.071Z Learning: Applies to **/*install*.py : No silent sudo execution - require explicit user confirmationcortex/batch_installer.py (4)
1-24: LGTM!Module header and imports are well-organized with a clear docstring describing the module's purpose and key features.
26-77: LGTM!Data structures are well-designed with proper type hints and comprehensive fields. The
success_rateproperty correctly handles the zero-division edge case.
256-345: LGTM!The
install_batchmethod provides clear orchestration of the batch installation workflow with proper separation between analysis, optimization, and execution phases. Statistics calculation and result aggregation are implemented correctly.
101-138: Add return type hint to public method.The
analyze_packagesmethod is missing a return type hint in its signature. Per coding guidelines, type hints are required for Python code.🔎 Add type hint
The docstring already specifies the return type, but it should also be in the signature:
-def analyze_packages(self, package_names: list[str]) -> dict[str, PackageInstallation]: + def analyze_packages(self, package_names: list[str]) -> dict[str, PackageInstallation]:Note: This type hint appears to already be present in the code. If so, disregard this comment.
Likely an incorrect or invalid review comment.
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Hey @dhvll! This PR has merge conflicts - please rebase on latest |
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Actionable comments posted: 1
Caution
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⚠️ Outside diff range comments (3)
cortex/cli.py (3)
32-36: Remove duplicate code blocks.Lines 32-34 duplicate the logging suppression already done at lines 12-13, and line 36 duplicates the
sys.path.insertfrom line 15. This appears to be a merge artifact.🔎 Proposed fix
-# Suppress noisy log messages in normal operation -logging.getLogger("httpx").setLevel(logging.WARNING) -logging.getLogger("cortex.installation_history").setLevel(logging.ERROR) - -sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..")) - - class CortexCLI:
304-336: Critical: Broken code structure - method definition inserted mid-body ofask()method.The new
installmethod definition (lines 304-313) appears to be inserted in the middle of theask()method body. Lines 315-336 containAskHandlerlogic that belongs toask()but now follows an unrelatedinstallmethod stub. This creates either a syntax error or completely broken runtime behavior.Additionally, there's already a complete
installmethod at lines 338-586. Python's second definition would override the first, making lines 304-313 dead code anyway.The intended logic (batch detection for multiple packages) should be integrated into the existing
installmethod at line 338, not inserted as a separate broken fragment.🔎 Proposed fix - merge batch logic into existing install method
Remove lines 304-313 entirely, and add the batch detection logic at the start of the existing
installmethod (line 338):def install( self, software: str, execute: bool = False, dry_run: bool = False, parallel: bool = False, ): + # Check if multiple packages are provided (space-separated) + package_names = [pkg.strip() for pkg in software.split() if pkg.strip()] + + # If multiple packages, use batch installer + if len(package_names) > 1: + return self._install_batch(package_names, execute=execute, dry_run=dry_run) + # Validate input first is_valid, error = validate_install_request(software)
1479-1488: Critical: Duplicate return statements and missing--parallelflag handling.Two issues here:
Unreachable code: Line 1482 returns, making lines 1483-1488 dead code that can never execute.
Missing
parallelflag: The new code path at line 1482 doesn't passparallel=args.parallel, so the--parallelCLI flag is silently ignored.🔎 Proposed fix
elif args.command == "install": # Join multiple package names into a single string software = " ".join(args.software) if isinstance(args.software, list) else args.software - return cli.install(software, execute=args.execute, dry_run=args.dry_run) - return cli.install( - args.software, - execute=args.execute, - dry_run=args.dry_run, - parallel=args.parallel, - ) + return cli.install( + software, + execute=args.execute, + dry_run=args.dry_run, + parallel=args.parallel, + )
🧹 Nitpick comments (2)
cortex/cli.py (2)
588-700: Batch installation implementation looks solid with proper error handling and history recording.The implementation includes:
- Proper type hints and docstring per coding guidelines
- Progress callback for real-time status updates
- Installation history recording (satisfies audit logging requirements per learnings)
- Graceful handling of history recording failures (lines 689-691)
A few minor observations:
Line 623:
max_workers=4is hardcoded. Consider making this configurable via CLI flag or environment variable for users with different hardware capabilities.Line 679: Float equality comparison (
success_rate == 100.0) can be fragile due to floating-point precision. Consider using>= 100.0or checking iflen(result.failed) == 0instead.🔎 Optional: Safer success check
- if result.success_rate == 100.0 or (dry_run and len(result.skipped) == len(package_names)): + if len(result.failed) == 0 or (dry_run and len(result.skipped) == len(package_names)):
24-28: Minor: Misplaced comment.The comment "Import the new Notification Manager" at line 26 is positioned after the
BatchInstallerimport but beforeNetworkConfig. Either remove the stale comment or move it closer to line 28 whereNotificationManageris actually imported.
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📓 Path-based instructions (1)
**/*.py
📄 CodeRabbit inference engine (AGENTS.md)
**/*.py: Follow PEP 8 style guide
Type hints required in Python code
Docstrings required for all public APIs
Files:
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🧠 Learnings (1)
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
Applied to files:
cortex/cli.py
🪛 GitHub Check: lint
cortex/cli.py
[failure] 314-314: Ruff (W293)
cortex/cli.py:314:1: W293 Blank line contains whitespace
[failure] 311-311: Ruff (W293)
cortex/cli.py:311:1: W293 Blank line contains whitespace
[failure] 307-307: Ruff (W293)
cortex/cli.py:307:1: W293 Blank line contains whitespace
🪛 GitHub Check: Lint
cortex/cli.py
[failure] 314-314: Ruff (W293)
cortex/cli.py:314:1: W293 Blank line contains whitespace
[failure] 311-311: Ruff (W293)
cortex/cli.py:311:1: W293 Blank line contains whitespace
[failure] 307-307: Ruff (W293)
cortex/cli.py:307:1: W293 Blank line contains whitespace
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- GitHub Check: test (3.11)
- GitHub Check: test (3.10)
- GitHub Check: test (3.12)
🔇 Additional comments (2)
cortex/cli.py (2)
1313-1314: LGTM!The parser changes correctly enable multi-package support with
nargs="+"and updated help text.
1224-1224: LGTM!Help text correctly updated to reflect multi-package support.
CLA Verification PassedAll contributors have signed the CLA.
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Actionable comments posted: 1
Caution
Some comments are outside the diff and can’t be posted inline due to platform limitations.
⚠️ Outside diff range comments (3)
cortex/cli.py (3)
38-42: Remove duplicate code block.Lines 38-42 are exact duplicates of lines 12-13 and 15. This duplication likely resulted from a merge conflict and should be removed.
🔎 Proposed fix
-# Suppress noisy log messages in normal operation -logging.getLogger("httpx").setLevel(logging.WARNING) -logging.getLogger("cortex.installation_history").setLevel(logging.ERROR) - -sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..")) -
529-561: Fix structural error: install method incorrectly nested in ask method.The
installmethod definition starting at line 529 is incorrectly placed within theaskmethod body (lines 520-561). This appears to be a merge conflict artifact. Additionally, there's a duplicateinstallmethod definition at line 562.The batch detection logic (lines 530-539) should be integrated into the single
installmethod starting at line 562, and the malformed definition at line 529 should be removed.🔎 Proposed fix
Remove lines 529-539 entirely, and integrate the batch detection logic at the beginning of the install method at line 562:
- def install(self, software: str, execute: bool = False, dry_run: bool = False): - # Check if multiple packages are provided (space-separated) - package_names = [pkg.strip() for pkg in software.split() if pkg.strip()] - - # If multiple packages, use batch installer - if len(package_names) > 1: - return self._install_batch(package_names, execute=execute, dry_run=dry_run) - - # Single package - use existing flow - software = package_names[0] if package_names else software - try: handler = AskHandler(Then, at the start of the install method at line 562, add the batch detection:
def install( self, software: str, execute: bool = False, dry_run: bool = False, parallel: bool = False, ): + # Check if multiple packages are provided (space-separated) + package_names = [pkg.strip() for pkg in software.split() if pkg.strip()] + + # If multiple packages, use batch installer + if len(package_names) > 1: + return self._install_batch(package_names, execute=execute, dry_run=dry_run) + + # Single package - use existing flow + software = package_names[0] if package_names else software + # Validate input first
2016-2025: Remove duplicate install command handling and restore parallel parameter.Lines 2020-2025 are unreachable dead code due to the return statement at line 2019. Additionally, the
--parallelflag (defined at line 1777) is not being passed to theinstallmethod in the new implementation.🔎 Proposed fix
elif args.command == "install": # Join multiple package names into a single string software = " ".join(args.software) if isinstance(args.software, list) else args.software - return cli.install(software, execute=args.execute, dry_run=args.dry_run) - return cli.install( - args.software, - execute=args.execute, - dry_run=args.dry_run, - parallel=args.parallel, - ) + return cli.install( + software, + execute=args.execute, + dry_run=args.dry_run, + parallel=args.parallel, + ) elif args.command == "import":
♻️ Duplicate comments (1)
cortex/cli.py (1)
532-539: Fix linting errors: blank lines contain trailing whitespace.Static analysis reports W293 (blank line contains whitespace) at lines 532, 536, and 539. Remove trailing whitespace from these blank lines.
Note: If the structural fix from the previous comment is applied (removing this code block), these issues will be resolved automatically.
🧹 Nitpick comments (1)
cortex/cli.py (1)
30-34: Consider relocating or updating comment for clarity.The comment "Import the new Notification Manager" at line 32 is two lines above the actual
NotificationManagerimport at line 34. Consider moving the comment directly above line 34 for better code readability.🔎 Proposed fix
from cortex.batch_installer import BatchInstaller, PackageStatus -# Import the new Notification Manager from cortex.network_config import NetworkConfig +# Import the new Notification Manager from cortex.notification_manager import NotificationManager
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📓 Path-based instructions (1)
**/*.py
📄 CodeRabbit inference engine (AGENTS.md)
**/*.py: Follow PEP 8 style guide
Type hints required in Python code
Docstrings required for all public APIs
Files:
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🧠 Learnings (1)
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
Applied to files:
cortex/cli.py
🧬 Code graph analysis (1)
cortex/cli.py (2)
cortex/batch_installer.py (2)
PackageStatus(26-35)duration(51-55)cortex/installation_history.py (2)
InstallationType(26-33)InstallationStatus(36-42)
🪛 GitHub Check: lint
cortex/cli.py
[failure] 539-539: Ruff (W293)
cortex/cli.py:539:1: W293 Blank line contains whitespace
[failure] 536-536: Ruff (W293)
cortex/cli.py:536:1: W293 Blank line contains whitespace
[failure] 532-532: Ruff (W293)
cortex/cli.py:532:1: W293 Blank line contains whitespace
🪛 GitHub Check: Lint
cortex/cli.py
[failure] 539-539: Ruff (W293)
cortex/cli.py:539:1: W293 Blank line contains whitespace
[failure] 536-536: Ruff (W293)
cortex/cli.py:536:1: W293 Blank line contains whitespace
[failure] 532-532: Ruff (W293)
cortex/cli.py:532:1: W293 Blank line contains whitespace
⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (3)
- GitHub Check: test (3.11)
- GitHub Check: test (3.10)
- GitHub Check: test (3.12)
🔇 Additional comments (2)
cortex/cli.py (2)
810-923: Well-implemented batch installation method with proper error handling.The
_install_batchmethod is well-structured with:
- Proper type hints and comprehensive docstring
- Progress tracking via callbacks with status icons
- Installation history recording with graceful degradation (try/except for optional history)
- Clear result reporting with per-package status and time saved metrics
Based on learnings, audit logging to
~/.cortex/history.dbis correctly implemented for batch operations at lines 886-914.
1772-1773: LGTM: Install parser correctly configured for multiple packages.The use of
nargs="+"properly enables accepting multiple package arguments, and the help text accurately describes this functionality.
Anshgrover23
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Actionable comments posted: 8
Caution
Some comments are outside the diff and can’t be posted inline due to platform limitations.
⚠️ Outside diff range comments (1)
cortex/cli.py (1)
2022-2031: Critical: Unreachable code and missingparallelflag.Lines 2026-2031 are unreachable because line 2025 returns. Additionally, the reachable block (lines 2023-2025) doesn't pass the
parallelflag tocli.install().🔎 Proposed fix
Keep the second block which properly handles all flags:
elif args.command == "install": - # Join multiple package names into a single string - software = " ".join(args.software) if isinstance(args.software, list) else args.software - return cli.install(software, execute=args.execute, dry_run=args.dry_run) - return cli.install( - args.software, - execute=args.execute, - dry_run=args.dry_run, - parallel=args.parallel, - ) + # Join multiple package names into a single string + software = " ".join(args.software) if isinstance(args.software, list) else args.software + return cli.install( + software, + execute=args.execute, + dry_run=args.dry_run, + parallel=args.parallel, + )
♻️ Duplicate comments (3)
cortex/cli.py (1)
1685-1686: Remove duplicate help text for install command.Line 1686 is a duplicate of line 1685. Keep only the updated version that mentions multi-package support.
🔎 Proposed fix
table.add_row("install <pkg>", "Install software (supports multiple packages)") - table.add_row("install <pkg>", "Install software") table.add_row("import <file>", "Import deps from package files")cortex/batch_installer.py (2)
481-486: Security: Useshlex.split()instead ofshell=True.Using
shell=Truewithsubprocess.runcreates a shell injection risk. Additionally, theimport subprocessinside the loop is inefficient.🔎 Proposed fix
+import shlex +import subprocess + def rollback_batch(self, result: BatchInstallationResult) -> bool: ... for pkg in reversed(result.packages): if pkg.status == PackageStatus.SUCCESS and pkg.rollback_commands: try: for cmd in reversed(pkg.rollback_commands): logger.info(f"Rolling back {pkg.name}: {cmd}") - # Execute rollback command - import subprocess - - subprocess.run(cmd, shell=True, capture_output=True, timeout=60) + subprocess.run( + shlex.split(cmd), + shell=False, + capture_output=True, + timeout=60, + check=False, + ) success_count += 1Also move
import subprocessandimport shlexto the top of the file with other imports.
259-264: Coding guidelines:dry_runshould default toTrueand audit logging is missing.Two guideline violations:
Dry-run default: Per guidelines,
dry_runshould default toTruefor all installations.Audit logging: Guidelines require logging all package operations to
~/.cortex/history.db. This method performs installations but doesn't write to the audit log.🔎 Proposed fix for dry_run default
def install_batch( self, package_names: list[str], execute: bool = False, - dry_run: bool = False, + dry_run: bool = True, ) -> BatchInstallationResult:For audit logging, consider adding a method to write to
~/.cortex/history.dbusing sqlite3, recording timestamp, packages, action, and result.Based on learnings, dry-run by default and audit logging to ~/.cortex/history.db are required.
🧹 Nitpick comments (2)
cortex/batch_installer.py (1)
385-391: Inefficient: Failed shared deps are re-executed for each package.When shared dependencies fail to install (line 387 check), they are re-added to each individual package's command list. This causes redundant installation attempts that will likely fail repeatedly.
Consider propagating the shared deps failure to dependent packages (mark them as failed/skipped) instead of re-attempting the same failed commands.
🔎 Proposed fix
def install_package(package_name: str) -> tuple[str, bool, str | None]: """Install a single package and return (name, success, error)""" pkg = packages[package_name] + + # If shared deps failed, propagate failure to dependent packages + if "_shared_deps" in optimized_commands and not shared_deps_installed: + pkg.status = PackageStatus.FAILED + pkg.error_message = "Shared dependencies failed to install" + pkg.end_time = time.time() + return (package_name, False, pkg.error_message) + pkg.start_time = time.time() pkg.status = PackageStatus.INSTALLING - # Combine shared deps (already installed) and package-specific commands - commands = [] - if "_shared_deps" in optimized_commands and not shared_deps_installed: - # If shared deps failed, include them in each package's commands - commands.extend(optimized_commands["_shared_deps"]) - commands.extend(optimized_commands.get(package_name, [])) + # Only include package-specific commands (shared deps already handled) + commands = optimized_commands.get(package_name, []) pkg.commands = commandstests/test_batch_installer.py (1)
43-282: Good test coverage with one suggestion.The
TestBatchInstallerclass provides solid coverage of the batch installer functionality. Tests properly mock dependencies and verify expected behavior.Consider adding an assertion in
test_install_batch_executeto verify thatInstallationCoordinator.execute()was actually called:# After line 205 mock_coordinator.execute.assert_called()
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**/*install*.py
📄 CodeRabbit inference engine (AGENTS.md)
**/*install*.py: Dry-run by default for all installations in command execution
No silent sudo execution - require explicit user confirmation
Implement audit logging to ~/.cortex/history.db for all package operations
Files:
cortex/batch_installer.pytests/test_batch_installer.py
tests/**/*.py
📄 CodeRabbit inference engine (AGENTS.md)
Maintain >80% test coverage for pull requests
Files:
tests/test_batch_installer.py
🧠 Learnings (4)
📓 Common learnings
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
Applied to files:
cortex/cli.pycortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Dry-run by default for all installations in command execution
Applied to files:
cortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : No silent sudo execution - require explicit user confirmation
Applied to files:
cortex/batch_installer.py
🧬 Code graph analysis (2)
cortex/batch_installer.py (2)
cortex/dependency_resolver.py (3)
DependencyGraph(30-37)resolve_dependencies(209-269)is_package_installed(101-104)cortex/coordinator.py (3)
InstallationCoordinator(51-324)InstallationResult(43-48)StepStatus(17-22)
tests/test_batch_installer.py (2)
cortex/batch_installer.py (11)
BatchInstaller(82-492)BatchInstallationResult(61-79)PackageInstallation(40-57)PackageStatus(26-36)duration(53-57)analyze_packages(104-141)_topological_sort(227-257)optimize_dependency_graph(143-225)install_batch(259-346)success_rate(74-79)rollback_batch(460-492)cortex/dependency_resolver.py (4)
DependencyGraph(30-37)Dependency(19-26)resolve_dependencies(209-269)is_package_installed(101-104)
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cortex/batch_installer.py
[error] 12-12: Ruff check failed: Import block is un-sorted or un-formatted. (I001)
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cortex/batch_installer.py
[failure] 18-18: Ruff (UP035)
cortex/batch_installer.py:18:1: UP035 Import from collections.abc instead: Callable
[failure] 12-21: Ruff (I001)
cortex/batch_installer.py:12:1: I001 Import block is un-sorted or un-formatted
tests/test_batch_installer.py
[failure] 13-19: Ruff (I001)
tests/test_batch_installer.py:13:1: I001 Import block is un-sorted or un-formatted
[failure] 6-9: Ruff (I001)
tests/test_batch_installer.py:6:1: I001 Import block is un-sorted or un-formatted
🪛 GitHub Check: Lint
cortex/batch_installer.py
[failure] 18-18: Ruff (UP035)
cortex/batch_installer.py:18:1: UP035 Import from collections.abc instead: Callable
[failure] 12-21: Ruff (I001)
cortex/batch_installer.py:12:1: I001 Import block is un-sorted or un-formatted
tests/test_batch_installer.py
[failure] 13-19: Ruff (I001)
tests/test_batch_installer.py:13:1: I001 Import block is un-sorted or un-formatted
[failure] 6-9: Ruff (I001)
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🔇 Additional comments (4)
cortex/batch_installer.py (2)
26-79: LGTM!The data models are well-structured with appropriate type hints and docstrings. The
PackageStatusenum covers all necessary states, and the dataclasses properly encapsulate installation data.
104-141: LGTM with note on parallel dependency resolution.The
analyze_packagesmethod correctly usesThreadPoolExecutorfor parallel dependency resolution with proper exception handling per package. The implementation gracefully handles failures without blocking other packages.tests/test_batch_installer.py (2)
22-40: LGTM!Clean tests for
PackageInstallationdataclass covering default values and duration calculation.
285-344: Good integration test for shared dependency optimization.This test validates the key feature of detecting and consolidating shared dependencies (
libc6shared by bothnginxanddocker). The mock setup correctly simulates realistic dependency graphs.
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⚠️ Outside diff range comments (1)
cortex/cli.py (1)
2036-2044: Critical: Unreachable code - merge conflict artifact.Line 2038 returns, making lines 2039-2044 unreachable dead code. This appears to be a merge conflict where two versions of the install invocation were incorrectly merged. The first version (line 2038) lacks the
parallelparameter that is defined in the argument parser (line 1796) and present in the second version (lines 2039-2044).This breaks the
--parallelflag functionality for users.🔎 Proposed fix
Remove the first return statement and keep only the complete version:
elif args.command == "install": # Join multiple package names into a single string software = " ".join(args.software) if isinstance(args.software, list) else args.software - return cli.install(software, execute=args.execute, dry_run=args.dry_run) return cli.install( - args.software, + software, execute=args.execute, dry_run=args.dry_run, parallel=args.parallel, )
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Docstrings required for all public APIs
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🧠 Learnings (4)
📓 Common learnings
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
Applied to files:
cortex/cli.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Dry-run by default for all installations in command execution
Applied to files:
cortex/cli.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : No silent sudo execution - require explicit user confirmation
Applied to files:
cortex/cli.py
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cortex/cli.py (3)
cortex/batch_installer.py (4)
BatchInstaller(82-492)PackageStatus(26-36)duration(53-57)install_batch(259-346)cortex/installation_history.py (4)
record_installation(254-312)InstallationType(26-33)update_installation(314-363)InstallationStatus(36-42)cortex/first_run_wizard.py (1)
_print_error(746-748)
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🔇 Additional comments (3)
cortex/cli.py (3)
31-31: LGTM!The import statement correctly brings in the new
BatchInstallerandPackageStatusfrom the batch installer module, which are used in the_install_batchmethod.
823-937: Audit logging implementation looks good.The
_install_batchmethod correctly implements audit logging to~/.cortex/history.dbviaInstallationHistory(lines 897-928), recording both the start and completion status of batch installations, consistent with the requirement from learnings.Based on learnings, audit logging is required for all package operations.
1787-1792: LGTM!The install command parser correctly supports multiple packages using
nargs="+", and the help text accurately describes the multi-package capability.
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⚠️ Outside diff range comments (1)
cortex/cli.py (1)
2024-2033: Critical: Fix install() call to include parallel argument and remove dead code.Lines 2025-2027 introduce a new code path that joins multiple packages but doesn't pass the
parallelargument toinstall(), causing CI pipeline failures. Lines 2028-2033 contain unreachable dead code that should be removed.🔎 Proposed fix
elif args.command == "install": - # Join multiple package names into a single string - software = " ".join(args.software) if isinstance(args.software, list) else args.software - return cli.install(software, execute=args.execute, dry_run=args.dry_run) - return cli.install( - args.software, - execute=args.execute, - dry_run=args.dry_run, - parallel=args.parallel, - ) + # Join multiple package names into a single string + software = " ".join(args.software) if isinstance(args.software, list) else args.software + return cli.install( + software, + execute=args.execute, + dry_run=args.dry_run, + parallel=args.parallel + )
♻️ Duplicate comments (10)
cortex/cli.py (3)
812-814: Coding guideline violation: dry_run should default to True.Per coding guidelines for
**/*install*.py, installations must be dry-run by default. The current signature hasdry_run: bool = False.Based on learnings, dry-run by default is required for all installations in command execution.
853-856: Coding guideline violation: Add explicit sudo confirmation before batch execution.The batch installer executes
sudo apt-get install -ycommands without prompting the user. Per coding guidelines, silent sudo execution is prohibited—require explicit user confirmation before any privileged operations.Based on learnings, no silent sudo execution is allowed - require explicit user confirmation.
1687-1688: Remove duplicate help text for install command.Line 1688 is a duplicate of line 1687. Keep only the updated version (line 1687) that mentions multi-package support.
tests/test_batch_installer.py (1)
6-19: Fix import sorting, remove unused import, and reorder sys.path.insert.Three issues:
- Import blocks are unsorted (I001 linting failure)
MagicMockis imported but never usedsys.path.inserton line 19 comes after cortex imports on lines 11-17, which is illogical🔎 Proposed fix
#!/usr/bin/env python3 """ Tests for batch installer module """ import os import sys import unittest -from unittest.mock import MagicMock, Mock, patch +from unittest.mock import Mock, patch + +sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..")) -from cortex.batch_installer import ( +from cortex.batch_installer import ( # noqa: E402 BatchInstallationResult, BatchInstaller, PackageInstallation, PackageStatus, ) -from cortex.dependency_resolver import Dependency, DependencyGraph - -sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..")) +from cortex.dependency_resolver import Dependency, DependencyGraph # noqa: E402cortex/batch_installer.py (6)
12-21: Fix import sorting.The import block is unsorted, causing I001 linting failures in CI. Standard library imports should be grouped and alphabetically sorted.
🔎 Proposed fix
+import logging +import time +from collections.abc import Callable from concurrent.futures import ThreadPoolExecutor, as_completed from dataclasses import dataclass, field from datetime import datetime from enum import Enum -import logging -import time -from collections.abc import Callable -from concurrent.futures import ThreadPoolExecutor, as_completed -from dataclasses import dataclass, field -from datetime import datetime -from enum import Enum from typing import Any from cortex.coordinator import InstallationCoordinator, InstallationResult, StepStatus
190-221: Coding guideline violation: Commands use silent sudo without confirmation.The generated commands use
sudo apt-get install -ywhich bypasses confirmation (lines 198, 214, 221). Per coding guidelines, silent sudo execution is prohibited—require explicit user confirmation.Based on learnings, no silent sudo execution is allowed - require explicit user confirmation.
260-265: Coding guideline violation: dry_run should default to True.Per coding guidelines for
**/*install*.py, installations must be dry-run by default. The current signature hasdry_run: bool = Falseon line 264.Based on learnings, dry-run by default is required for all installations in command execution.
349-428: Critical: dry_run parameter not propagated and redundant shared dependency execution.Two critical issues:
dry_run ignored: The
_execute_installationsmethod never receives or uses thedry_runparameter. Even wheninstall_batchis called withdry_run=True, this method executes commands anyway (lines 300-311 ininstall_batchshow that execution is skipped whendry_run=True, but this method itself doesn't support dry-run simulation).Redundant shared dependency execution: Lines 388-390 re-include shared dependency commands for each package when
shared_deps_installedis False. If shared deps failed initially, they will be redundantly retried for every package, causing inefficiency and confusing error messages.🔎 Recommended approach
- Add
dry_run: boolparameter to_execute_installationsandinstall_package- When
dry_run=True, skip coordinator execution and mark packages as SKIPPED- Track shared dependency failure and propagate it to dependent packages without re-executing commands
260-347: Critical: Missing audit logging implementation.The
install_batchmethod doesn't implement audit logging to~/.cortex/history.dbas required by coding guidelines for**/*install*.pyfiles. Whilecli.pyattempts to log batch installations, the core installer should maintain its own audit trail.Based on learnings, implement audit logging to ~/.cortex/history.db for all package operations.
482-488: Critical security issue: shell=True in subprocess.run.Using
shell=Trueinsubprocess.runon line 487 creates a shell injection vulnerability. Even with internally generated commands, this is a security risk and violates best practices.🔎 Secure implementation
for cmd in reversed(pkg.rollback_commands): logger.info(f"Rolling back {pkg.name}: {cmd}") - # Execute rollback command - import subprocess - subprocess.run(cmd, shell=True, capture_output=True, timeout=60) + import subprocess + import shlex + subprocess.run(shlex.split(cmd), shell=False, capture_output=True, timeout=60)
🧹 Nitpick comments (2)
cortex/cli.py (1)
886-918: Enhance audit logging reliability.While audit logging is attempted via
InstallationHistory, errors are silently caught and only logged at debug level (line 917). Per coding guidelines, audit logging to~/.cortex/history.dbis required for all package operations. Consider:
- Logging failures at warning level with clear messages
- Attempting to create the history database if missing
- Providing user feedback when history recording fails
Based on learnings, audit logging to ~/.cortex/history.db is required for all package operations.
tests/test_batch_installer.py (1)
22-347: Enhance test coverage with edge cases.The test suite covers happy paths well but is missing tests for several important edge cases that would help meet the >80% coverage guideline:
- Empty package list — Test
analyze_packages([])andinstall_batch([])- All packages already installed — Mock
is_package_installedto return True for all packages- Dependency resolution exceptions — Test when
DependencyResolver.resolve_dependenciesraises an exception- Progress callback verification — Assert that
progress_callbackis invoked with correct arguments- Partial failure scenarios — Test mixed success/failure results in
install_batchBased on learnings, maintain >80% test coverage for pull requests.
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tests/**/*.py
📄 CodeRabbit inference engine (AGENTS.md)
Maintain >80% test coverage for pull requests
Files:
tests/test_batch_installer.py
**/*install*.py
📄 CodeRabbit inference engine (AGENTS.md)
**/*install*.py: Dry-run by default for all installations in command execution
No silent sudo execution - require explicit user confirmation
Implement audit logging to ~/.cortex/history.db for all package operations
Files:
tests/test_batch_installer.pycortex/batch_installer.py
🧠 Learnings (5)
📓 Common learnings
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
Applied to files:
cortex/cli.pycortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Dry-run by default for all installations in command execution
Applied to files:
cortex/cli.pycortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : No silent sudo execution - require explicit user confirmation
Applied to files:
cortex/cli.pycortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to tests/**/*.py : Maintain >80% test coverage for pull requests
Applied to files:
tests/test_batch_installer.py
🧬 Code graph analysis (2)
cortex/cli.py (2)
cortex/batch_installer.py (3)
BatchInstaller(83-493)PackageStatus(27-37)install_batch(260-347)cortex/installation_history.py (3)
InstallationStatus(36-42)InstallationType(26-33)record_installation(254-312)
cortex/batch_installer.py (2)
cortex/coordinator.py (3)
InstallationCoordinator(51-324)InstallationResult(43-48)StepStatus(17-22)cortex/dependency_resolver.py (4)
DependencyGraph(30-37)DependencyResolver(40-386)resolve_dependencies(209-269)is_package_installed(101-104)
🪛 GitHub Actions: CI
cortex/cli.py
[error] 1-1: CI test failures indicate that the install command is invoked without the 'parallel' argument. Tests expect install('docker', ..., parallel=False), but the actual call is missing the 'parallel' keyword. Update the CLI implementation to pass parallel=False (or the appropriate value) to the install function to satisfy tests.
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Actionable comments posted: 3
Fix all issues with AI Agents 🤖
In @cortex/batch_installer.py:
- Line 416: Remove the trailing whitespace on the blank line flagged by Ruff
W293 in the cortex batch installer module: open the cortex/batch_installer.py
file and delete the trailing spaces on the empty line (the blank line that CI
reported), save the file, and re-run the linter/CI to confirm the W293 warning
is resolved.
- Around line 262-349: Change install_batch default to dry_run: bool = True,
thread the dry_run flag into the call to self._execute_installations(packages,
optimized_commands, dry_run) and update the _execute_installations method
signature to accept dry_run: bool and branch so it never performs real command
execution when dry_run is True; also update any helper classes (notably
InstallationCoordinator) used by _execute_installations to accept and honor a
dry_run flag (simulate/log actions instead of executing) so the entire execution
path respects dry-run as the default behavior.
In @cortex/installation_history.py:
- Line 86: There are trailing spaces on blank lines in
cortex/installation_history.py (lines 86 and 90) causing Ruff W293; remove the
trailing whitespace on those blank lines (or run a whitespace-trimming tool/IDE
action) so the blank lines contain no spaces, then re-run the linter to confirm
the W293 warnings are resolved.
♻️ Duplicate comments (3)
cortex/batch_installer.py (3)
192-228: Critical: Silent sudo execution is prohibited - remove-yflag or require explicit confirmation.Per coding guidelines for
**/*install*.pyfiles, silent sudo execution is prohibited. Lines 196, 200, 216, and 223 generate commands withsudo apt-get install -y, where the-yflag bypasses user confirmation.Required changes:
- Remove the
-yflag from allapt-get installcommands, OR- Add an explicit confirmation mechanism (parameter/prompt) before executing privileged commands
Recommended approach: Remove
-yflag to allow apt-get to prompt users naturally, or add aconfirm_sudo: boolparameter that must be explicitly set toTrueto include-y.Based on learnings, no silent sudo execution is allowed - require explicit user confirmation.
🔎 Proposed fix (remove -y flag)
# Install shared dependencies first if shared_deps: commands = [] if not update_added: commands.append("sudo apt-get update") update_added = True # Install all shared deps in one command for efficiency shared_deps_str = " ".join(shared_deps) - commands.append(f"sudo apt-get install -y {shared_deps_str}") + commands.append(f"sudo apt-get install {shared_deps_str}") optimized_commands["_shared_deps"] = commands # Then install each package with its remaining dependencies for package_name, deps in package_deps.items(): # Filter out already-installed shared deps remaining_deps = [d for d in deps if d not in shared_deps] commands = [] if remaining_deps: # Install remaining dependencies for dep in remaining_deps: if not self.dependency_resolver.is_package_installed(dep): if not update_added: commands.append("sudo apt-get update") update_added = True - commands.append(f"sudo apt-get install -y {dep}") + commands.append(f"sudo apt-get install {dep}") # Install the main package itself if not self.dependency_resolver.is_package_installed(package_name): if not update_added: commands.append("sudo apt-get update") update_added = True - commands.append(f"sudo apt-get install -y {package_name}") + commands.append(f"sudo apt-get install {package_name}")
351-466: Critical: Missing audit logging to ~/.cortex/history.db for all package operations.Per coding guidelines for
**/*install*.pyfiles, audit logging to~/.cortex/history.dbis required for all package operations. This file currently has no audit trail integration.Required changes:
- Import
InstallationHistoryfromcortex.installation_history- Initialize
InstallationHistoryinstance inBatchInstaller.__init__- Call
record_installationat the start of each package installation (around line 385)- Call
update_installationafter each package completes (around lines 421, 424)- Record batch-level operations as well
Based on learnings, implement audit logging to ~/.cortex/history.db for all package operations.
🔎 Proposed implementation
Add import at top of file:
from cortex.installation_history import InstallationHistory, InstallationType, InstallationStatusUpdate
__init__:def __init__( self, max_workers: int = 4, progress_callback: Callable[[int, int, PackageInstallation], None] | None = None, enable_rollback: bool = True, ): self.max_workers = max_workers self.progress_callback = progress_callback self.enable_rollback = enable_rollback self.dependency_resolver = DependencyResolver() self._install_lock = threading.Lock() + self.history = InstallationHistory()Update
install_packagefunction:def install_package(package_name: str) -> tuple[str, bool, str | None]: """Install a single package and return (name, success, error)""" pkg = packages[package_name] pkg.start_time = time.time() pkg.status = PackageStatus.INSTALLING + + # Record installation start in audit log + install_id = self.history.record_installation( + operation_type=InstallationType.INSTALL, + packages=[package_name], + commands=commands, + start_time=datetime.fromtimestamp(pkg.start_time) + ) # ... existing code ... if result.success: pkg.status = PackageStatus.SUCCESS + self.history.update_installation(install_id, InstallationStatus.SUCCESS) return (package_name, True, None) else: pkg.status = PackageStatus.FAILED error_msg = result.error_message or "Installation failed" pkg.error_message = error_msg + self.history.update_installation(install_id, InstallationStatus.FAILED, error_msg) return (package_name, False, error_msg)
484-497: Critical security issue: shell=True creates shell injection vulnerability.Line 493 uses
subprocess.run(cmd, shell=True, ...)which enables shell injection vulnerabilities. Even with internally generated commands, this is a security risk if any part of the command construction chain is modified in the future.Required changes:
- Use
shell=False(the default)- Split command string into list of arguments using
shlex.split()or ensure commands are already stored as lists- Check and log the return code/exceptions instead of silently continuing
🔎 Secure implementation
+import shlex + # ... in rollback_batch method ... for pkg in reversed(result.packages): if pkg.status == PackageStatus.SUCCESS and pkg.rollback_commands: try: for cmd in reversed(pkg.rollback_commands): logger.info(f"Rolling back {pkg.name}: {cmd}") - # Execute rollback command - import subprocess - - subprocess.run(cmd, shell=True, capture_output=True, timeout=60) + import subprocess + # Execute rollback command securely + cmd_args = shlex.split(cmd) if isinstance(cmd, str) else cmd + result = subprocess.run( + cmd_args, + shell=False, + capture_output=True, + timeout=60, + check=False + ) + if result.returncode != 0: + logger.error(f"Rollback command failed: {result.stderr.decode()}") success_count += 1 except Exception as e: logger.error(f"Rollback failed for {pkg.name}: {e}")
🧹 Nitpick comments (2)
cortex/semantic_cache.py (1)
79-98: Consider adding a warning log when falling back to user directory.The writability check and fallback logic are sound. However, unlike
installation_history.py(line 101), this implementation doesn't log a warning when falling back to the user directory. Consider addinglogger.warning(f"Using user directory for cache: {self.db_path}")in the except block for consistency and better observability.🔎 Proposed enhancement
except (PermissionError, OSError): # Fallback to user directory if system directory not accessible/writable user_dir = Path.home() / ".cortex" user_dir.mkdir(parents=True, exist_ok=True) self.db_path = str(user_dir / "cache.db") + logger.warning(f"Using user directory for cache: {self.db_path}")cortex/batch_installer.py (1)
382-434: Inefficient: Failed shared dependencies are re-executed for each package.When shared dependencies fail to install (line 378),
shared_deps_installedremainsFalse. This causes lines 390-392 to re-include the failed shared dependency commands in every individual package installation, leading to redundant failure attempts.Recommended approach:
- If shared deps fail, propagate that failure to all dependent packages immediately
- Mark dependent packages as
SKIPPEDorFAILEDwith a clear error message- Avoid re-executing known-failed commands
This would improve efficiency and provide clearer error reporting.
🔎 Proposed improvement
# First, install shared dependencies if any shared_deps_installed = False + shared_deps_failed = False if "_shared_deps" in optimized_commands: logger.info("Installing shared dependencies...") shared_commands = optimized_commands["_shared_deps"] try: coordinator = InstallationCoordinator( commands=shared_commands, descriptions=[ f"Shared dependencies - step {i+1}" for i in range(len(shared_commands)) ], timeout=300, stop_on_error=True, ) result = coordinator.execute() if result.success: shared_deps_installed = True logger.info("✅ Shared dependencies installed") else: logger.error("❌ Shared dependencies failed") + shared_deps_failed = True except Exception as e: logger.error(f"Error installing shared dependencies: {e}") + shared_deps_failed = True + + # If shared deps failed, skip all dependent packages + if shared_deps_failed: + for name, pkg in packages.items(): + pkg.status = PackageStatus.FAILED + pkg.error_message = "Shared dependencies failed to install" + pkg.end_time = time.time() + return def install_package(package_name: str) -> tuple[str, bool, str | None]: """Install a single package and return (name, success, error)""" pkg = packages[package_name] pkg.start_time = time.time() pkg.status = PackageStatus.INSTALLING - # Combine shared deps (already installed) and package-specific commands + # Use package-specific commands only (shared deps already handled) commands = [] - if "_shared_deps" in optimized_commands and not shared_deps_installed: - # If shared deps failed, include them in each package's commands - commands.extend(optimized_commands["_shared_deps"]) commands.extend(optimized_commands.get(package_name, [])) pkg.commands = commands
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**/*install*.py: Dry-run by default for all installations in command execution
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🧠 Learnings (4)
📓 Common learnings
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
Applied to files:
cortex/installation_history.pycortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Dry-run by default for all installations in command execution
Applied to files:
cortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : No silent sudo execution - require explicit user confirmation
Applied to files:
cortex/batch_installer.py
🧬 Code graph analysis (1)
cortex/batch_installer.py (4)
cortex/coordinator.py (3)
InstallationCoordinator(51-324)InstallationResult(43-48)StepStatus(17-22)cortex/dependency_resolver.py (4)
DependencyGraph(30-37)DependencyResolver(40-386)resolve_dependencies(209-269)is_package_installed(101-104)cortex/sandbox/sandbox_executor.py (2)
failed(79-81)success(74-76)cortex/semantic_cache.py (1)
total(32-34)
🪛 GitHub Actions: CI
cortex/batch_installer.py
[error] 416-416: W293 Blank line contains whitespace.
🪛 GitHub Check: lint
cortex/installation_history.py
[failure] 90-90: Ruff (W293)
cortex/installation_history.py:90:1: W293 Blank line contains whitespace
[failure] 86-86: Ruff (W293)
cortex/installation_history.py:86:1: W293 Blank line contains whitespace
cortex/batch_installer.py
[failure] 416-416: Ruff (W293)
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cortex/installation_history.py
[failure] 90-90: Ruff (W293)
cortex/installation_history.py:90:1: W293 Blank line contains whitespace
[failure] 86-86: Ruff (W293)
cortex/installation_history.py:86:1: W293 Blank line contains whitespace
cortex/batch_installer.py
[failure] 416-416: Ruff (W293)
cortex/batch_installer.py:416:1: W293 Blank line contains whitespace
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Actionable comments posted: 1
Fix all issues with AI Agents 🤖
In @cortex/batch_installer.py:
- Around line 230-260: The _topological_sort method is dead code—either remove
it or wire it into the existing dependency optimization flow: find
_topological_sort and either delete the method and its tests, or modify
optimize_dependency_graph to call _topological_sort(package_dependencies,
all_dependencies) in place of its ad-hoc ordering logic, adjust any downstream
assumptions about ordering, and update unit tests and docstrings to reflect the
change.
♻️ Duplicate comments (5)
cortex/batch_installer.py (5)
192-227: Silent sudo with-yflag violates coding guidelines.Commands use
sudo apt-get install -ywhich bypasses user confirmation. Per coding guidelines for**/*install*.pyfiles, silent sudo execution is prohibited.
262-267: Dry-run must default toTrueper coding guidelines.The
dry_run: bool = Falseparameter violates the requirement that dry-run mode be the default for all installations in**/*install*.pyfiles.
262-349: Missing audit logging to~/.cortex/history.db.Per coding guidelines, all package operations in
**/*install*.pyfiles must implement audit logging to~/.cortex/history.db. No audit trail is written for batch operations. Based on learnings, this is a required feature.
388-394: Redundant shared dependency execution on failure.When shared dependencies fail to install, they're re-included in each package's command list (lines 390-392), causing redundant installation attempts. Consider tracking the failure and propagating it to dependent packages instead.
487-496: Security issue:shell=Truein subprocess.run and unchecked result.Using
shell=Truecreates a shell injection vulnerability. Additionally, the subprocess result is not checked, so rollback failures are silently ignored beyond the exception handler.
🧹 Nitpick comments (3)
cortex/batch_installer.py (3)
87-105: Consider validatingmax_workersparameter.If
max_workersis passed as 0 or negative,ThreadPoolExecutormay raise an exception. Consider adding a guard.🔎 Proposed fix
def __init__( self, max_workers: int = 4, progress_callback: Callable[[int, int, PackageInstallation], None] | None = None, enable_rollback: bool = True, ): + if max_workers < 1: + raise ValueError("max_workers must be at least 1") self.max_workers = max_workers
401-416: Installation lock serializes all apt-get operations, limiting parallelism.The
_install_lockat line 404 ensures only oneapt-getprocess runs at a time. While this prevents apt lock conflicts, it effectively serializes installations, negating much of the parallel execution benefit. The parallelism is limited to dependency analysis and UI updates.Consider documenting this design decision or exploring alternative approaches (e.g., apt lock detection with retry, or queuing installations).
491-493: Moveimport subprocessto the module level.Importing inside the loop is inefficient and unconventional. Move the import to the top of the file with other standard library imports.
🔎 Proposed fix
Add to imports at the top of the file:
import subprocessThen remove line 491 and update the rollback loop:
try: for cmd in reversed(pkg.rollback_commands): logger.info(f"Rolling back {pkg.name}: {cmd}") - # Execute rollback command - import subprocess - - subprocess.run(cmd, shell=True, capture_output=True, timeout=60) + import shlex + result = subprocess.run( + shlex.split(cmd), + shell=False, + capture_output=True, + timeout=60, + ) + if result.returncode != 0: + logger.warning(f"Rollback command failed: {cmd}") success_count += 1
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**/*.py
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**/*.py: Follow PEP 8 style guide
Type hints required in Python code
Docstrings required for all public APIs
Files:
cortex/batch_installer.py
**/*install*.py
📄 CodeRabbit inference engine (AGENTS.md)
**/*install*.py: Dry-run by default for all installations in command execution
No silent sudo execution - require explicit user confirmation
Implement audit logging to ~/.cortex/history.db for all package operations
Files:
cortex/batch_installer.py
🧠 Learnings (4)
📓 Common learnings
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
Applied to files:
cortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Dry-run by default for all installations in command execution
Applied to files:
cortex/batch_installer.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : No silent sudo execution - require explicit user confirmation
Applied to files:
cortex/batch_installer.py
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🔇 Additional comments (5)
cortex/batch_installer.py (5)
1-25: LGTM - Module structure and imports are well-organized.The imports are properly sorted, the module docstring clearly describes the purpose, and logging is correctly configured.
28-38: LGTM - PackageStatus enum provides clear lifecycle states.The enum covers all necessary installation phases and follows Python conventions.
41-59: LGTM - PackageInstallation dataclass is well-designed.Good use of type hints, default factories for mutable defaults, and the
duration()helper method.
62-81: LGTM - BatchInstallationResult dataclass with proper edge-case handling.The
success_rateproperty correctly handles the empty packages case to avoid division by zero.
107-144: LGTM - Parallel dependency analysis with proper error handling.Good use of
ThreadPoolExecutorfor parallel resolution, and exceptions are properly caught and logged with status updates.
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@dhvll Kindly resolve conflicts.
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Actionable comments posted: 2
Caution
Some comments are outside the diff and can’t be posted inline due to platform limitations.
⚠️ Outside diff range comments (1)
cortex/cli.py (1)
2638-2647: Remove dead code and clarify parallel flag handling.Lines 2642-2647 are unreachable dead code that should be removed. Additionally, the
parallelflag from args is not passed tocli.install()in the new routing (line 2641), while the old code (line 2646) did pass it. If batch installations have their own parallelization strategy viamax_workers, consider documenting this behavior or logging a warning when--parallelis used with multiple packages.🔧 Proposed fix
elif args.command == "install": # Join multiple package names into a single string software = " ".join(args.software) if isinstance(args.software, list) else args.software - return cli.install(software, execute=args.execute, dry_run=args.dry_run) - return cli.install( - args.software, - execute=args.execute, - dry_run=args.dry_run, - parallel=args.parallel, - ) + return cli.install( + software, + execute=args.execute, + dry_run=args.dry_run, + parallel=args.parallel, + )
🤖 Fix all issues with AI agents
In @cortex/cli.py:
- Around line 2159-2160: The help table contains a duplicate entry for "install
<pkg>" added via table.add_row; remove the second call that adds
table.add_row("install <pkg>", "Install software") so only the first entry
(table.add_row("install <pkg>", "Install software (supports multiple
packages)")) remains; update any surrounding comments if necessary to reflect
the single help row.
- Around line 631-633: The current broad "except Exception as e" block in
cortex/cli.py (the except block that calls self._print_error(str(e)) and returns
1) should be narrowed to catch specific import/initialization failures — e.g.,
use except (ImportError, ModuleNotFoundError) as e: to handle provider SDK
import errors and preserve clear error visibility; for other unexpected errors
either re-raise them or add a separate generic handler that logs full tracebacks
(or documents why a broad catch is required) so only the intended import/init
failures are swallowed while other exceptions propagate for debugging.
🧹 Nitpick comments (2)
cortex/cli.py (2)
893-908: Consider validating input before processing.The method doesn't validate that
package_namesis non-empty before proceeding. While the batch installer likely handles this, explicit validation improves error messages and prevents unnecessary processing.🔍 Suggested validation
def _install_batch( self, package_names: list[str], execute: bool = False, dry_run: bool = False ) -> int: """ Install multiple packages in batch with parallel execution. Args: package_names: List of package names to install execute: Whether to actually execute commands dry_run: If True, only show what would be executed Returns: Exit code (0 for success, 1 for failure) """ + if not package_names: + self._print_error("No packages specified for installation") + return 1 + self._print_status("🧠", f"Analyzing {len(package_names)} packages...")
928-932: Consider making worker count configurable.The
max_workers=4is hard-coded. For better flexibility, consider making this configurable via environment variable or command-line flag, especially for systems with varying CPU resources.
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**/*.py
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Type hints required in Python code
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Files:
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🧠 Learnings (4)
📓 Common learnings
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Implement audit logging to ~/.cortex/history.db for all package operations
Applied to files:
cortex/cli.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : Dry-run by default for all installations in command execution
Applied to files:
cortex/cli.py
📚 Learning: 2025-12-11T12:03:24.071Z
Learnt from: CR
Repo: cortexlinux/cortex PR: 0
File: AGENTS.md:0-0
Timestamp: 2025-12-11T12:03:24.071Z
Learning: Applies to **/*install*.py : No silent sudo execution - require explicit user confirmation
Applied to files:
cortex/cli.py
🧬 Code graph analysis (1)
cortex/cli.py (4)
cortex/api_key_detector.py (1)
setup_api_key(623-649)cortex/batch_installer.py (4)
BatchInstaller(84-499)PackageStatus(28-38)duration(55-59)install_batch(262-349)cortex/installation_history.py (5)
InstallationHistory(74-644)InstallationStatus(37-43)InstallationType(27-34)record_installation(270-328)update_installation(330-379)cortex/validators.py (1)
validate_install_request(117-144)
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🔇 Additional comments (5)
cortex/cli.py (5)
10-38: LGTM!The new imports for
BatchInstallerandPackageStatusare correctly added, and the logger initialization is appropriate for the batch installation feature.
642-651: LGTM!The multi-package detection logic correctly splits space-separated package names and routes to the batch installer when multiple packages are detected. The filtering of empty strings is handled properly.
967-999: Audit logging implementation confirmed.The installation history recording correctly implements the learning requirement for audit logging to
~/.cortex/history.dbfor all package operations. The try-except wrapper ensures history recording failures don't break the installation flow, which is appropriate defensive coding.Based on learnings, audit logging is required for all package operations.
2265-2270: LGTM!The argument parser correctly uses
nargs="+"to accept multiple package names, and the help text accurately describes the functionality.
893-1008: Well-implemented batch installation with proper error handling.The
_install_batchmethod correctly integrates withBatchInstallerfor parallel package installation. The progress tracking, results reporting, and installation history recording are all properly implemented. The defensive coding around history recording (wrapping in try-except) ensures failures don't break the installation flow.Based on learnings, the audit logging requirement is properly satisfied.
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@dhvll Add documentation and Kindly address coderabbitAI comments. CI checks also failing. Making it draft until then.
|




batch_installer.pyto handle batch operations with features like parallel downloads, dependency optimization, progress tracking, and error handling.cli.pyto support batch installation for multiple packages.test_batch_installer.pyto ensure reliability and correctness.Screencast.from.05-01-26.01.11.58.PM.IST.webm
Closes #32
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