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Merged
d33bs merged 8 commits into from
Apr 25, 2025
Merged

Add software DOI and other minor touch-ups #302

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d13e5d3
add doi info and minor touch-ups
d33bs Feb 18, 2025
45844f9
change to shorter name
d33bs Feb 18, 2025
10a202e
linting
d33bs Feb 18, 2025
8849351
update name
d33bs Feb 18, 2025
febc65d
update cff to include others
d33bs Apr 14, 2025
430b876
add ken
d33bs Apr 15, 2025
2586f07
Update .pre-commit-config.yaml
d33bs Apr 25, 2025
54ead79
Merge branch 'main' into add-doi-info
d33bs Apr 25, 2025
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4 changes: 2 additions & 2 deletions .github/workflows/test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ on:
- cron: "0 7 * * 3"

jobs:
run_tests:
tests:
strategy:
matrix:
# matrixed execution for parallel gh-action performance increases
Expand Down Expand Up @@ -47,7 +47,7 @@ jobs:
# smaller tests first.
run_large_data_tests:
runs-on: ubuntu-22.04
needs: run_tests
needs: tests
steps:
- name: Checkout
uses: actions/checkout@v4
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22 changes: 19 additions & 3 deletions CITATION.cff
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Expand Up @@ -11,17 +11,33 @@ authors:
- given-names: David
family-names: Bunten
orcid: 'https://orcid.org/0000-0001-6041-3665'
- given-names: Faisal
family-names: Alquaddoomi
orcid: 'https://orcid.org/0000-0003-4297-8747'
- given-names: Jenna
family-names: Tomkinson
orcid: 'https://orcid.org/0000-0003-2676-5813'
- given-names: Erik
family-names: Serrano
orcid: 'https://orcid.org/0000-0003-4188-9080'
- given-names: Michael
family-names: Lippincott
orcid: 'https://orcid.org/0000-0002-8637-1448'
- family-names: Brewer
given-names: Kenneth
orcid: 'https://orcid.org/0000-0003-4030-0254'
- given-names: Vincent
family-names: Rubinetti
orcid: 'https://orcid.org/0000-0002-4655-3773'
- given-names: Faisal
family-names: Alquaddoomi
orcid: 'https://orcid.org/0000-0003-4297-8747'
- given-names: Gregory
family-names: Way
orcid: 'https://orcid.org/0000-0002-0503-9348'
repository-code: 'https://github.com/cytomining/CytoTable'
url: 'https://cytomining.github.io/CytoTable/'
identifiers:
- description: Software DOI
type: doi
value: "10.5281/zenodo.14888111"
abstract: >-
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
keywords:
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5 changes: 5 additions & 0 deletions readme.md
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Expand Up @@ -2,6 +2,11 @@

# CytoTable

![PyPI - Version](https://img.shields.io/pypi/v/cytotable)
[![Build Status](https://github.com/cytomining/cytotable/actions/workflows/test.yml/badge.svg?branch=main)](https://github.com/cytomining/cytotable/actions/workflows/test.yml?query=branch%3Amain)
[![Poetry](https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/)
[![Software DOI badge](https://zenodo.org/badge/DOI/10.5281/zenodo.14888111.svg)](https://doi.org/10.5281/zenodo.14888111)

![dataflow](https://raw.githubusercontent.com/cytomining/cytotable/main/docs/source/_static/dataflow.svg?raw=true)
_Diagram showing data flow relative to this project._

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