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dependabot merged 1 commit into from
May 12, 2025
Merged

Bump the python-packages group with 4 updates #322

dependabot merged 1 commit into from
May 12, 2025

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Bumps the python-packages group with 4 updates: parsl, pycytominer, dunamai and botocore.

Updates parsl from 2025.4.28 to 2025.5.5

Commits

Updates pycytominer from 1.1.0 to 1.2.3

Release notes

Sourced from pycytominer's releases.

v1.2.3 (2025-05-08)

What's Changed

Full Changelog: cytomining/pycytominer@v1.2.2...v1.2.3

v1.2.2 (2025-01-23)

What's Changed

Full Changelog: cytomining/pycytominer@v1.2.1...v1.2.2

... (truncated)

Changelog

Sourced from pycytominer's changelog.

v1.2.3 (2025-05-08)

Detailed release notes

Fix

  • cell_locations: modify tests for data updates (#505)
  • tests: Organize DeepProfiler test data in one spot (#520)
  • docs: Update docs configuration for virtualenv and poetry bug (#523)

Docs

  • citations update doi for nature methods pub (#514)
  • citations Remove citation info (keep just pointer) in readme (#515)

Refactor

  • poetry: add plugin configuration to pyproject (#509)

Build

  • python: Enable Python 3.13 compatibility (#526)
  • deps: various dependency updates automated by dependabot

CI

  • runners: bump macos gh actions runner version (#506)
  • pre-commit: add pre-commit-update and related updates (#507)
  • cache: use os with arch for cache naming (#508)

v1.2.2 (2025-01-23)

Detailed release notes

Fix

  • feature_select: Fix Bug in sample Parameter in feature_select() (#495)
  • cell_locations: Check if downloaded file is empty (#385)

Build

  • deps: various dependency updates automated by dependabot

Docs

  • maintainer: add maintainer governance docs (#487)

CI

  • pre-commit: add pre-commit lite for auto fixes (#488)

... (truncated)

Commits
  • 8f54406 bump: version 1.2.2 -> 1.2.3 (#527)
  • 6329b70 Enable Python 3.13 compatibility (#526)
  • 35a510f build(deps): bump pyarrow from 19.0.1 to 20.0.0 (#525)
  • 43b6c96 build(deps): bump the python-packages group with 5 updates (#524)
  • 667c3b6 docs(pr): comment block for PR template desc (#496)
  • 5ae3635 update docs conf for virtualenv and poetry bug (#523)
  • 2ac013d refactor: add plugin configuration to pyproject (#509)
  • be42682 ci: add pre-commit-update and related updates (#507)
  • 3b41cbc build(deps-dev): bump h11 from 0.14.0 to 0.16.0 (#521)
  • 1d5524f organize deepprofiler test data in one spot (#520)
  • Additional commits viewable in compare view

Updates dunamai from 1.23.1 to 1.24.1

Release notes

Sourced from dunamai's releases.

v1.24.1 (2025-05-09)

v1.24.0 (2025-05-07)

  • Changed: Previously, for Git 2.7+, if the initial commit were both tagged and empty, Dunamai would raise an exception due to Git not reporting that tag in git log --simplify-by-decoration. Now, if a tag is missing from that list, Dunamai treats it as the oldest tag.

v1.23.2 (2025-05-06)

  • Fixed: Version.from_git would fail if the GIT_TRACE environment variable were set, due to unexpected output from Git.
Changelog

Sourced from dunamai's changelog.

v1.24.1 (2025-05-09)

v1.24.0 (2025-05-07)

  • Changed: Previously, for Git 2.7+, if the initial commit were both tagged and empty, Dunamai would raise an exception due to Git not reporting that tag in git log --simplify-by-decoration. Now, if a tag is missing from that list, Dunamai treats it as the oldest tag.

v1.23.2 (2025-05-06)

  • Fixed: Version.from_git would fail if the GIT_TRACE environment variable were set, due to unexpected output from Git.
Commits
  • c6ebd09 Release v1.24.1
  • f924530 #103: Update changelog
  • ce3b736 Merge pull request #103 from emmanuel-ferdman/master
  • e42b4bb Resolve warnings of regex library
  • aaef31b Release v1.24.0
  • f2a80e3 Avoid unnecessary nesting of tmp folders
  • 3f14f01 #99: Add note about _GitRefInfo compatibility
  • b37d9c4 #99: Fix test since older Git versions use a different code path
  • 44ee099 #99: Gate empty initial commit behavior to Git 2.7+
  • cb49693 #99: Fix assert for older Git versions
  • Additional commits viewable in compare view

Updates botocore from 1.38.9 to 1.38.13

Commits

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@dependabot
Bump the python-packages group with 4 updates
8c1dced 
Bumps the python-packages group with 4 updates: [parsl](https://github.com/Parsl/parsl), [pycytominer](https://github.com/cytomining/pycytominer), [dunamai](https://github.com/mtkennerly/dunamai) and [botocore](https://github.com/boto/botocore).


Updates `parsl` from 2025.4.28 to 2025.5.5
- [Commits](Parsl/parsl@2025.04.28...2025.05.05)

Updates `pycytominer` from 1.1.0 to 1.2.3
- [Release notes](https://github.com/cytomining/pycytominer/releases)
- [Changelog](https://github.com/cytomining/pycytominer/blob/main/CHANGELOG.md)
- [Commits](cytomining/pycytominer@v1.1.0...v1.2.3)

Updates `dunamai` from 1.23.1 to 1.24.1
- [Release notes](https://github.com/mtkennerly/dunamai/releases)
- [Changelog](https://github.com/mtkennerly/dunamai/blob/master/CHANGELOG.md)
- [Commits](mtkennerly/dunamai@v1.23.1...v1.24.1)

Updates `botocore` from 1.38.9 to 1.38.13
- [Commits](boto/botocore@1.38.9...1.38.13)

---
updated-dependencies:
- dependency-name: parsl
  dependency-version: 2025.5.5
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: pycytominer
  dependency-version: 1.2.3
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: dunamai
  dependency-version: 1.24.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: botocore
  dependency-version: 1.38.13
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels May 12, 2025
d33bs
d33bs approved these changes May 12, 2025
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@dependabot squash and merge

@dependabot dependabot bot merged commit 5bad8ee into main May 12, 2025
10 checks passed
@dependabot dependabot bot deleted the dependabot/pip/python-packages-81b3a7ca47 branch May 12, 2025 20:28
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