Skip to content

Add preprint DOI metadata #343

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
d33bs merged 2 commits into from
Jul 29, 2025
Merged

Add preprint DOI metadata #343

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
ed210d5
add preprint doi metadata
d33bs Jul 29, 2025
01ad3a5
Update .pre-commit-config.yaml
d33bs Jul 29, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -77,7 +77,7 @@ repos:
hooks:
- id: validate-cff
- repo: https://github.com/software-gardening/almanack
rev: v0.1.5
rev: v0.1.6
hooks:
- id: almanack-check
- repo: https://github.com/PyCQA/pylint
Expand Down
3 changes: 3 additions & 0 deletions CITATION.cff
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -38,6 +38,9 @@ identifiers:
- description: Software DOI
type: doi
value: "10.5281/zenodo.14888111"
- description: Preprint DOI
type: doi
value: "10.1101/2025.06.19.660613"
abstract: >-
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
keywords:
Expand Down
3 changes: 2 additions & 1 deletion readme.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,8 @@
![PyPI - Version](https://img.shields.io/pypi/v/cytotable)
[![Build Status](https://github.com/cytomining/cytotable/actions/workflows/test.yml/badge.svg?branch=main)](https://github.com/cytomining/cytotable/actions/workflows/test.yml?query=branch%3Amain)
[![Poetry](https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/)
[![Software DOI badge](https://zenodo.org/badge/DOI/10.5281/zenodo.14888111.svg)](https://doi.org/10.5281/zenodo.14888111)
[![Preprint DOI badge](https://img.shields.io/badge/Preprint_DOI-10.1101/2025.06.19.660613-blue)](https://doi.org/10.1101/2025.06.19.660613)
[![Software DOI badge](https://img.shields.io/badge/Software_DOI-10.5281/zenodo.14888111-blue)](https://doi.org/10.5281/zenodo.14888111)

![dataflow](https://raw.githubusercontent.com/cytomining/cytotable/main/docs/source/_static/dataflow.svg?raw=true)
_Diagram showing data flow relative to this project._
Expand Down