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@dependabot dependabot bot commented on behalf of github Aug 12, 2025

Bumps the python-packages group with 3 updates: parsl, pycytominer and botocore.

Updates parsl from 2025.7.28 to 2025.8.4

Commits

Updates pycytominer from 1.2.3 to 1.2.4

Release notes

Sourced from pycytominer's releases.

v1.2.4 (2025-08-06)

What's Changed

Full Changelog: cytomining/pycytominer@v1.2.3...v1.2.4

Changelog

Sourced from pycytominer's changelog.

v1.2.4 (2025-08-06)

Detailed release notes

Feat

  • Return output filepath when output_file is used by core functions (#530)

Docs

  • citations add CytoTable guidance to readme (#556)
  • Alleviate nbsphinx dependency bug for docs builds (#536)

Refactor

  • transition asserts for production code (#564)

Build

  • deps: various dependency updates automated by dependabot

CI

  • add Almanack to pre-commit checks (#548)
  • fix poetry install for devcontainer (#550)
  • Add isort to linting checks, apply formatting, and resolve circular imports (#545)
  • Use trusted publishing for PyPI package deployment (#532)
  • Update pre-commit-lite conditions (#528)
  • Add large_data_tests marker to help deselect time intensive tests for development (#529)

Chore

  • consistent project title casing (#547)
Commits
  • de26155 bump: version 1.2.3 -> 1.2.4 (#565)
  • 3ec43d0 refactor: transition asserts for production code (#564)
  • a344bab build(deps): bump sqlalchemy from 2.0.41 to 2.0.42 (#563)
  • 78b1254 build(deps): bump pyarrow from 20.0.0 to 21.0.0 (#561)
  • 333b7e6 build(deps-dev): bump furo from 2024.8.6 to 2025.7.19 (#560)
  • 61e4395 build(deps): bump the python-packages group with 4 updates (#559)
  • 43119a7 build(deps): bump pandas from 2.3.0 to 2.3.1 (#562)
  • a4fa14e docs: add CytoTable guidance to readme (#556)
  • bfe19a0 build(deps-dev): bump starlette from 0.41.2 to 0.47.2 (#558)
  • 861a431 build(deps): bump aiohttp from 3.10.11 to 3.12.14 (#557)
  • Additional commits viewable in compare view

Updates botocore from 1.40.2 to 1.40.7

Commits
  • 9e97196 Merge branch 'release-1.40.7'
  • b9e1e61 Bumping version to 1.40.7
  • 26f0200 Update endpoints model
  • 37cd41c Update to latest models
  • 63db11e Merge branch 'release-1.40.6'
  • fd29679 Merge branch 'release-1.40.6' into develop
  • 943cf49 Bumping version to 1.40.6
  • 55341c3 Update endpoints model
  • 30ae2e5 Update to latest models
  • dcba0cc Fix DynamoDB stubber failure with unresolvable deferred credentials (#3535)
  • Additional commits viewable in compare view

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Bumps the python-packages group with 3 updates: [parsl](https://github.com/Parsl/parsl), [pycytominer](https://github.com/cytomining/pycytominer) and [botocore](https://github.com/boto/botocore).


Updates `parsl` from 2025.7.28 to 2025.8.4
- [Commits](Parsl/parsl@2025.07.28...2025.08.04)

Updates `pycytominer` from 1.2.3 to 1.2.4
- [Release notes](https://github.com/cytomining/pycytominer/releases)
- [Changelog](https://github.com/cytomining/pycytominer/blob/main/CHANGELOG.md)
- [Commits](cytomining/pycytominer@v1.2.3...v1.2.4)

Updates `botocore` from 1.40.2 to 1.40.7
- [Commits](boto/botocore@1.40.2...1.40.7)

---
updated-dependencies:
- dependency-name: parsl
  dependency-version: 2025.8.4
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: pycytominer
  dependency-version: 1.2.4
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: botocore
  dependency-version: 1.40.7
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
...

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Aug 12, 2025
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@dependabot squash and merge

@dependabot dependabot bot merged commit 80082bf into main Aug 12, 2025
12 checks passed
@dependabot dependabot bot deleted the dependabot/pip/python-packages-7a3e8be689 branch August 12, 2025 03:58
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