Bump the python-packages group with 2 updates

.pre-commit-config.yaml

@@ -56,7 +56,7 @@ repos:
         args: ["-c", "pyproject.toml"]
         additional_dependencies: ["bandit[toml]"]
 -   repo: https://github.com/PyCQA/isort
-    rev: 6.1.0
+    rev: 7.0.0
     hooks:
     -   id: isort
 -   repo: https://github.com/jendrikseipp/vulture
@@ -82,7 +82,7 @@ repos:
     hooks:
     -   id: almanack-check
 -   repo: https://github.com/PyCQA/pylint
-    rev: v3.3.9
+    rev: v4.0.0
     hooks:
     -   id: pylint
         name: pylint

.pylintrc

@@ -54,10 +54,6 @@ persistent=yes
 # the version used to run pylint.
 py-version=3.8
 
-# When enabled, pylint would attempt to guess common misconfiguration and emit
-# user-friendly hints instead of false-positive error messages.
-suggestion-mode=yes
-
 # Allow loading of arbitrary C extensions. Extensions are imported into the
 # active Python interpreter and may run arbitrary code.
 unsafe-load-any-extension=no

pyproject.toml

@@ -18,7 +18,7 @@ keywords = [ "python", "cellprofiler", "single-cell-analysis", "way-lab" ]
 [tool.poetry.dependencies]
 python = ">=3.9,<3.14"
 pyarrow = ">=13.0.0"
-cloudpathlib = { extras = [ "all", "s3" ], version = ">=0.18,<0.23" }
+cloudpathlib = { extras = [ "all", "s3" ], version = ">=0.18,<0.24" }
 duckdb = ">=0.8.0,!=0.10.0,>=0.10.1"
 parsl = ">=2023.9.25"
 numpy = [

tests/data/in-carta/colas-lab/shrink_colas_lab_data_for_tests.py

@@ -50,7 +50,7 @@
         # as a pyarrow table then output to a new and
         # smaller csv for testing purposes.
 
-        OUTPUT_FILENAME = (
+        output_filename = (
             f"Test 0 Day{idx} Test Test_2024_Jan-0{idx+1}-{idx+12}-12-12_Test.csv"
         )
 
@@ -68,10 +68,10 @@
             ).fetch_arrow_table(),
             # output the filtered data as a CSV to a new location
             output_file=(
-                f"{TARGET_DATA_DIR}/{OUTPUT_FILENAME}"
+                f"{TARGET_DATA_DIR}/{output_filename}"
                 # For some files lowercase the first letter of the file
                 # as a simulation of the source data.
                 if idx < 3
-                else f"{TARGET_DATA_DIR}/{OUTPUT_FILENAME[0].lower() + OUTPUT_FILENAME[1:]}"
+                else f"{TARGET_DATA_DIR}/{output_filename[0].lower() + output_filename[1:]}"
             ),
         )