Enable anndata input and output

[d33bs]

Description

This PR enables anndata input through load_profiles, output and related functionality.

Closes #566

Thanks for any feedback!

What is the nature of your change?

• Bug fix (fixes an issue).
• Enhancement (adds functionality).
• Breaking change (fix or feature that would cause existing functionality to not work as expected).
• This change requires a documentation update.

Checklist

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📚 Documentation preview 📚: https://pycytominer--573.org.readthedocs.build/en/573/

[codecov-commenter]

Codecov Report

❌ Patch coverage is 92.05607% with 17 lines in your changes missing coverage. Please review.
✅ Project coverage is 93.89%. Comparing base (ab809c4) to head (1bc2edd).

Files with missing lines	Patch %	Lines
pycytominer/cyto_utils/anndata_utils.py	90.19%	10 Missing ⚠️
pycytominer/cyto_utils/load.py	80.00%	5 Missing ⚠️
tests/test_cyto_utils/test_anndata_utils.py	96.36%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #573      +/-   ##
==========================================
- Coverage   94.05%   93.89%   -0.17%     
==========================================
  Files          57       59       +2     
  Lines        3213     3407     +194     
==========================================
+ Hits         3022     3199     +177     
- Misses        191      208      +17     

Flag	Coverage Δ
unittests	93.89% <92.05%> (-0.17%)	⬇️

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[d33bs]

Hello @flying-sheep , this PR follows our work in cytomining/CytoTable#351 to add anndata integration with pycytominer. Could we ask for thoughts on the implementation? We'd greatly appreciate any guidance you 'd have for us - thank you!

[flying-sheep]

I’ll take a look tomorrow!

[gwaybio]

An exciting milestone @d33bs ! Let's discuss this a bit more

[gwaybio]

A bit more discussion items

[gwaybio]

Looks great @d33bs ! I have only minor comments

[ilan-gold]

nice!

[d33bs]

Thanks so much @gwaybio, @flying-sheep, and @ilan-gold for your reviews and thoughtful comments throughout! I'm going to merge this in now.

[ilan-gold]

Thanks @d33bs for engaging with us, we love to see it and to help!