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Preprocess Drug Response Prediction Data

This project contains all the steps necessary to get from the original data repositories of CCLE/GDSC/… to usable input files.

In utils/remapping_pubchem_ids.ipynb are all necessary steps to generate SMILES for as many occurring drugs as well as the fingerprint generation with RDKit.

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This project contains all steps necessary to get from the original data repositories of CCLE/GDSC/… to usable input files.

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