Testing started to fail due to an error in parsing (?) + new deprecationwarning #1390
Description
Run python -m pytest -s -v --cov=dandi --cov-report=xml dandi
ERROR: while parsing the following warning configuration:
ignore:.*Value with data type .* is being converted:hdmf.build.warnings.DtypeConversionWarning
This error occurred:
Traceback (most recent call last):
File "/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/_pytest/config/__init__.py", line [17](https://github.com/dandi/dandi-cli/actions/runs/7607121489/job/20713946745#step:7:18)61, in parse_warning_filter
Warning: ory: Type[Warning] = _resolve_warning_category(category_)
File "/opt/hostedtoolcache/Python/3.9.[18](https://github.com/dandi/dandi-cli/actions/runs/7607121489/job/20713946745#step:7:19)/x64/lib/python3.9/site-packages/_pytest/config/__init__.py", line 1799, in _resolve_warning_category
m = __import__(module, None, None, [klass])
File "/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/hdmf/__init__.py", line 2, in <module>
from .backends.hdf5.h5_utils import H5Dataset, H5RegionSlicer
File "/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/hdmf/backends/__init__.py", line 1, in <module>
from . import hdf5
File "/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/hdmf/backends/hdf5/__init__.py", line 1, in <module>
from . import h5_utils, h5tools
File "/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/hdmf/backends/hdf5/h5_utils.py", line 22, in <module>
from ...region import RegionSlicer
File "/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/hdmf/region.py", line 4, in <module>
from .container import Data, DataRegion
File "/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/hdmf/container.py", line 11, in <module>
import pandas as pd
File "/opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages/pandas/__init__.py", line 2[21](https://github.com/dandi/dandi-cli/actions/runs/7607121489/job/20713946745#step:7:22), in <module>
warnings.warn(
DeprecationWarning:
Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0),
(to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries)
but was not found to be installed on your system.
If this would cause problems for you,
please provide us feedback at https://github.com/pandas-dev/pandas/issues/5[44](https://github.com/dandi/dandi-cli/actions/runs/7607121489/job/20713946745#step:7:45)66
not sure why the first warning besides may be not allowing for a module spec hdmf.build.warnings. there? but without it doesn't work either -- may be a bug in pytest?
as for pyarrow -- if we do not rely on its functionality in the tests - I guess could be ignored too