Skip to content

Update Allrun to allow root user #311

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
zhixchen merged 2 commits into from
Jun 30, 2023
Merged

Update Allrun to allow root user #311

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
b778e85
update Allrun to allow root user
Jun 30, 2023
cfca5ce
Merge branch 'deepmodeling:master' into update-Allrun
LefoMount Jun 30, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion examples/df0DFoam/zeroD_cubicReactor/CH4/pytorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=df0DFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/df0DFoam/zeroD_cubicReactor/H2/cvodeIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=df0DFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/df0DFoam/zeroD_cubicReactor/H2/libtorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=df0DFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/df0DFoam/zeroD_cubicReactor/H2/pytorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=df0DFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfHighSpeedFoam/oneD_detonationH2/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,4 +10,4 @@ cp -r 0_orig/ 0/
runApplication blockMesh
runApplication setFields
runApplication decomposePar
runApplication mpirun --oversubscribe -np 8 $application -parallel
runApplication mpirun --oversubscribe -np 8 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfHighSpeedFoam/oneD_inertShockTube/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,4 +10,4 @@ cp -r 0_orig/ 0/
runApplication blockMesh
runApplication setFields
runApplication decomposePar
runApplication /usr/bin/mpirun -np 4 $application -parallel
runApplication /usr/bin/mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfHighSpeedFoam/oneD_reactiveShockTube/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,4 +10,4 @@ cp -r 0_orig/ 0/
runApplication blockMesh
runApplication setFields
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/2DSandiaD_DeePFGM/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ runApplication blockMesh

runApplication decomposePar -force

mpirun --oversubscribe -np 8 dfLowMachFoam -parallel
mpirun --oversubscribe -np 8 --allow-run-as-root dfLowMachFoam -parallel

./postProcess

Expand Down
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/2DSandiaD_flareFGM/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@ runApplication blockMesh

runApplication decomposePar -force

mpirun --oversubscribe -np 8 dfLowMachFoam -parallel
mpirun --oversubscribe -np 8 --allow-run-as-root dfLowMachFoam -parallel

./postProcess

Expand Down
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/oneD_freelyPropagation/CH4/pytorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/oneD_freelyPropagation/H2/cvodeIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/oneD_freelyPropagation/H2/libtorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/oneD_freelyPropagation/H2/pytorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/threeD_reactingTGV/H2/cvodeIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/threeD_reactingTGV/H2/libtorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/threeD_reactingTGV/H2/pytorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/twoD_HIT_flame/CH4/pytorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
4 changes: 2 additions & 2 deletions examples/dfLowMachFoam/twoD_SandiaD_EDC_Trans/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -19,15 +19,15 @@ foamDictionary -entry "chemistry" -set "off" constant/CanteraTorchProperties
runApplication setFields
runApplication decomposePar -force

runParallel $application
runParallel --allow-run-as-root $application

# Run with chemistry until flame reach its full size and its structure does not change significantly
foamDictionary -entry "startTime" -set "0.3" system/controlDict
foamDictionary -entry "writeInterval" -set "0.01" system/controlDict
foamDictionary -entry "endTime" -set "0.6" system/controlDict
foamDictionary -entry "chemistry" -set "on" constant/CanteraTorchProperties

runParallel -a $application
runParallel -a --allow-run-as-root $application


#------------------------------------------------------------------------------
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/twoD_reactingTGV/CH4/pytorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/twoD_tripleFlame/H2/cvodeIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/twoD_tripleFlame/H2/libtorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfLowMachFoam/twoD_tripleFlame/H2/pytorchIntegrator/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfLowMachFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfSprayFoam/aachenBomb/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfSprayFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel
2 changes: 1 addition & 1 deletion examples/dfSprayFoam/sydneySprayBurner/Allrun
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ application=dfSprayFoam

runApplication blockMesh
runApplication decomposePar
runApplication mpirun -np 4 $application -parallel
runApplication mpirun -np 4 --allow-run-as-root $application -parallel