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calculate neighbor statistics from CLI#1476

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wanghan-iapcm merged 5 commits intodeepmodeling:develfrom
njzjz:neighbor_stat
Feb 17, 2022
Merged

calculate neighbor statistics from CLI#1476
wanghan-iapcm merged 5 commits intodeepmodeling:develfrom
njzjz:neighbor_stat

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@njzjz njzjz commented Feb 14, 2022

In many cases, we need to confirm neighbor statistics before training.
This command provides such CLI option.

In many cases, we need to confirm neighbor statistics before training.
This command provides such CLI option.
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codecov-commenter commented Feb 14, 2022

Codecov Report

Merging #1476 (c7ccc08) into devel (82c787d) will decrease coverage by 11.40%.
The diff coverage is n/a.

Impacted file tree graph

@@             Coverage Diff             @@
##            devel    #1476       +/-   ##
===========================================
- Coverage   75.68%   64.28%   -11.41%     
===========================================
  Files          92        5       -87     
  Lines        7671       14     -7657     
===========================================
- Hits         5806        9     -5797     
+ Misses       1865        5     -1860     
Impacted Files Coverage Δ
deepmd/entrypoints/__init__.py
deepmd/entrypoints/main.py
deepmd/cluster/slurm.py
deepmd/descriptor/hybrid.py
deepmd/entrypoints/transfer.py
deepmd/train/trainer.py
source/op/_prod_force_se_r_grad.py
deepmd/infer/deep_tensor.py
deepmd/descriptor/se.py
deepmd/model/__init__.py
... and 77 more

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Could you please:

  1. add to the document showing how it works.
  2. add a unittest for neighbor_stat
    Thanks!

@njzjz njzjz requested a review from wanghan-iapcm February 15, 2022 20:45
Comment on lines +34 to +36
# set rcut to 0. will cause a core dumped
# TODO: check what is wrong
for rcut in (3., 6., 11.):
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@denghuilu setting rcut to 0. will cause "core dumped". Any ideas?

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(Although, I don't think some one will set it to 0)

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It might be caused by this line:

ncell[dd] = to_face[dd] / rc;

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LGTM

@wanghan-iapcm wanghan-iapcm merged commit 33a1dfa into deepmodeling:devel Feb 17, 2022
@njzjz njzjz deleted the neighbor_stat branch February 17, 2022 02:48
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4 participants