Pinned Loading

1. preprocess_videos preprocess_videos Public

   efficient preprocessing of large microscopy video data, optimized for GPU acceleration using JAX and CUDA

   Jupyter Notebook

2. flavell-lab/head_detector_unet2d flavell-lab/head_detector_unet2d Public

   UNet-based pipeline that segments object without clear edges from fluorescent microscopy images

   Jupyter Notebook

3. flavell-lab/ManualCellLabeler flavell-lab/ManualCellLabeler Public

   an interactive GUI that quickly checks through the output of AutoCellLabeler given a neuron class of interest

   Jupyter Notebook

4. flavell-lab/pub_utils flavell-lab/pub_utils Public

   Extract, Transform and Load publicly available datasets to create visualizations and data objects of standardized formats

   Jupyter Notebook

5. flavell-lab/NSM_5HTR_analysis flavell-lab/NSM_5HTR_analysis Public

   Data and code for making Figure 6 and 7 of this paper:

   Jupyter Notebook 1

6. dikang13.github.io dikang13.github.io Public

   personal website

   HTML